Basic Information

Insect: Heteromyza rotundicornis
Gene Symbol: -
Assembly: GCA_951394025.1
Location: OX596011.1:81115027-81116583[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 8.5e-05 0.0068 17.4 2.2 1 23 180 202 180 202 0.97

2 12 0.73 58 5.0 0.4 1 23 207 229 207 229 0.86

3 12 0.00039 0.031 15.3 1.0 1 23 236 258 236 258 0.98

4 12 0.055 4.4 8.5 1.2 1 23 263 285 263 285 0.91

5 12 1.4e-06 0.00011 23.0 1.5 1 23 294 316 294 316 0.98

6 12 9.6 7.7e+02 1.5 0.7 1 13 321 333 321 343 0.64

7 12 0.0012 0.095 13.8 0.5 1 23 350 372 350 372 0.96

8 12 0.003 0.24 12.5 0.3 1 23 377 399 377 399 0.97

9 12 0.0009 0.072 14.1 4.2 1 23 407 429 407 429 0.98

10 12 0.006 0.48 11.5 0.4 1 23 434 456 434 456 0.92

11 12 8.3e-07 6.7e-05 23.7 3.4 1 23 463 485 463 485 0.99

12 12 1.9e-06 0.00016 22.5 0.2 1 23 492 514 492 514 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	8.5e-05	0.0068	17.4	2.2	1	23	180	202	180	202	0.97
2	12	0.73	58	5.0	0.4	1	23	207	229	207	229	0.86
3	12	0.00039	0.031	15.3	1.0	1	23	236	258	236	258	0.98
4	12	0.055	4.4	8.5	1.2	1	23	263	285	263	285	0.91
5	12	1.4e-06	0.00011	23.0	1.5	1	23	294	316	294	316	0.98
6	12	9.6	7.7e+02	1.5	0.7	1	13	321	333	321	343	0.64
7	12	0.0012	0.095	13.8	0.5	1	23	350	372	350	372	0.96
8	12	0.003	0.24	12.5	0.3	1	23	377	399	377	399	0.97
9	12	0.0009	0.072	14.1	4.2	1	23	407	429	407	429	0.98
10	12	0.006	0.48	11.5	0.4	1	23	434	456	434	456	0.92
11	12	8.3e-07	6.7e-05	23.7	3.4	1	23	463	485	463	485	0.99
12	12	1.9e-06	0.00016	22.5	0.2	1	23	492	514	492	514	0.99

Sequence Information

Coding Sequence: ATGAAGGAAGGTATCGGCCAGGTTAAGATTGAATTACGCGATACAGGTACATCTACATCCGGAATCAGCGATCAAACAAACCAAAACGaattcaaagaaattaaagttGAAGACGAAATCGAACTCGGTGCTTCGAGTATTTCTGTCCAGTCCATTCCTACAGGCGATGAGGAACGGCACAACTATCAAACTGGTAAAGTGAATATCAAAATAGAagacgaaatggaattttggGCTCCCAGTAGTTCTTCTCGATCAATTGCTGGTACCGATGATGAGGAGCACAGCAATCAAAATATCCAAGATGAGTTCATAATAATTAAACTGGAAGACGAAATTGAATTCGGTGAACCGAGTATTTCTGTCCAGTCAATTTCTACATTCGATGATGAACAACCGCACAGCAATCAAACAATTCAAGATGAGCTCTCAGACAGTAAAGATGACATGGAATTTTGtgatgaagtggaaatggatgCATTAAATAATACAGAAACTACGGTTCCCGACAAACCTTGTAACAAAAAGAAATCGGAATTCATATGCGACATTTGCTCGAAGAAGTGTTCAACGAAGGCAAGTTTGAGCGCACATCGATTGCGTCATGGTAAACCGACTTTTCGCTGTAGTGTTTGCGGCGTGAACAAATTCACACAACTGGAGGTAGACAAGCATATGATAACGCACGATACCAACCCAAAATATTTCACATGCGACATCTGCCCGAAGAAATATTTAAGGAAGCCAGATCTGAACGAACATCGAAAGCGTCATGGTAAACCGAATTTCCACTGTACTGTTTGCGGTGTGGCCAAATTCACAAAAAGCGAGGTGGATATGCATATGAGGACTCACGAAATCATTACCAACCCAATCCTTTTCACATGCGACATTTGCTCGAAGAAGTATTCAACGAAGTCAAATCTGAGCGCTCATCGAGCGCGTCATGGTAAACCGAATTTCCACTGTACAGTGTGTGGCGTGTCCAAATTCACACAACTGGAGGTGGATATGCATGCAAAAACACACGATGCCAATCCAGTATATTTCACATGCGACATCTGCTCGAAGAAATATTTAAGGAAGGCCGATCTGATCAAGCATCGAGCGGGTCATGGCAAgccaaatttcaattgtaatatTTGTGGCGTGGCCAAAAGCACACAACGCGAGATGAACTCCcatatgaaaatacacgataCCACCGATCCAACATATTTCACATGCGACATCTGCTCGAAGAAGTACTTAAGGAAGTCACATCTGAACGAACATCGACTGCGTCATGGTAGACCGAATTTCCAGTGTACTGTTTGTGGCCTAACCAAATTCGCACAATACGAGTTGAATATACACATGAAGATACATGATGCCAACCGAACATTTTTCACATGCGACATCTGCCCGAAGAAGTGTTCAAAGAAATCAAATCTGCTCGAGCACATGAAGACGCACGACACCAATCGAGTGTACTTCACATGCAATATTTGTGCGAAGAGTTATTCAGCGAAGGCAAATCTGGTGGCGCACATGAAAACCCACGACAACATGTCATGA
Protein Sequence: MKEGIGQVKIELRDTGTSTSGISDQTNQNEFKEIKVEDEIELGASSISVQSIPTGDEERHNYQTGKVNIKIEDEMEFWAPSSSSRSIAGTDDEEHSNQNIQDEFIIIKLEDEIEFGEPSISVQSISTFDDEQPHSNQTIQDELSDSKDDMEFCDEVEMDALNNTETTVPDKPCNKKKSEFICDICSKKCSTKASLSAHRLRHGKPTFRCSVCGVNKFTQLEVDKHMITHDTNPKYFTCDICPKKYLRKPDLNEHRKRHGKPNFHCTVCGVAKFTKSEVDMHMRTHEIITNPILFTCDICSKKYSTKSNLSAHRARHGKPNFHCTVCGVSKFTQLEVDMHAKTHDANPVYFTCDICSKKYLRKADLIKHRAGHGKPNFNCNICGVAKSTQREMNSHMKIHDTTDPTYFTCDICSKKYLRKSHLNEHRLRHGRPNFQCTVCGLTKFAQYELNIHMKIHDANRTFFTCDICPKKCSKKSNLLEHMKTHDTNRVYFTCNICAKSYSAKANLVAHMKTHDNMS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -