Hrot001444.1
Basic Information
- Insect
- Heteromyza rotundicornis
- Gene Symbol
- -
- Assembly
- GCA_951394025.1
- Location
- OX596010.1:17148824-17151614[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7e-05 0.0014 19.6 1.5 2 23 288 309 287 309 0.97 2 15 7e-06 0.00057 20.8 3.0 1 23 315 337 315 337 0.98 3 15 3.4 2.7e+02 2.9 4.3 1 23 343 366 343 366 0.95 4 15 8.9e-05 0.0071 17.3 1.1 1 23 377 400 377 400 0.97 5 15 0.0095 0.76 10.9 0.6 2 20 446 464 445 467 0.93 6 15 0.00043 0.035 15.1 0.8 1 23 473 495 473 495 0.98 7 15 0.0095 0.76 10.9 1.3 7 23 596 612 591 612 0.93 8 15 1.7e-05 0.0014 19.5 0.8 1 23 619 641 619 641 0.97 9 15 0.00055 0.044 14.8 0.5 1 23 647 669 647 669 0.95 10 15 4.5 3.6e+02 2.5 0.0 1 23 680 703 680 703 0.87 11 15 0.27 21 6.4 1.0 1 23 709 731 709 731 0.87 12 15 5.8e-05 0.0047 17.9 0.6 3 23 738 759 737 759 0.96 13 15 0.005 0.4 11.8 0.1 1 23 767 790 767 790 0.96 14 15 0.0072 0.58 11.3 0.3 3 23 800 821 799 821 0.93 15 15 0.00079 0.063 14.3 0.8 2 23 827 848 826 848 0.96
Sequence Information
- Coding Sequence
- ATGTTCACCTGGCAACGTTGTGCTACTGGACGCATTTCGCTGGCGAAATCAAAGCGTGAGGCTCCTGCAGAGGTGGCAGCCGACGAAGATGTACGCCTTGACGCGTCTGTTTGCCGTGTCTGCCTGCATGCCAAAGGAACTGTTCCGCTGTTTGATGGATTTGGTTCGGACGAGCAATTTCGATATTGCACTTTGCTGGAGGCTACAGAGGACGATGGATTGCCAATTAAACTGTGTCAGGTTTGCACAAACAATATGCGCATTTCATACGATTTTCGTTTCCAAGCCACGTATGCGGAAAAGTATTTCCGAAAAACGGTTTTCTTGCCGGCGCCACAGAAAGAATTGGATTTCAATCAAGGGGAGTTATTGGCAGTGGAAGATCAGTTAGTACTAGATGAGAATATGCAGGAAATTGGCAAATTGCTGTTGGAACAAAACTCAGCAGTGGTGTCCGTACAAGATGCAGCAATGAATTCGGCATGCGGCGGCAAGGGTAGGAAGACTTACATTGAAGACCTTGATTCGGACAGCGATGGTTTAAGTGACCATTTCGCAGCAGCTTTTGTTCCTCCCGAAGAGATGGAAGACAATAAAGGAAATATTAGAGATGCAAGCCGTGATGAGACAGAGCAAAgcgcaacaacaaaacaagcaCATAAAGAAGAACGCGTTTCGCCACTAAATGACCAGGAAAATAAGAGCTGCCCACCCACCGCAAGTAGCAACCGGCCATCACACAATTCTAGTACCAACTTCGCAAATCAGCTTCAAACCATGAGCAGCCATTCACAGGAagaacttgaaaaaaaatgtagtacaGCAAAGCAGAAGCAGAACAATTCAAAAGAGGCAAAAGTGGAGTGCAACATTTGTGGCACCACCTTTACGCATATAAATTCGCTCAAGCAACATTTGATGAAGCATTCCGGAGAGCGACCATTCCAGTGTGAATTTTGCGAGAAAACGTTTACACGCCGCACCACTCTGAACATACACAGACGACTACACACGGGCGATCGTCCCTATCATTGTGATGAGTGCATCTGCAAATTCGTTACCAAGGATGCTAAGAATCGTCACAAAGAACGCGTGCATAGTGAGAGAGCTGAATCCAAAAAGTACACCTTCACCTGTGCCatatgcaatgaaaaattCGACTCCAAGTTCGCGTTACAAACACACAAGCGCAGTCTGCACACCGAAGATGAAAAGCTGAAGGCATCACCACGAAAAGCGGAGACTGACAAAACTAAACGAAAACGCATTGTTGTGAAGCCACGCCGCCCCCTGCAAATGGTGGACAAGGACGGCAATCCATTGGCAACGGTCAAATATTGTGGGATATGCCAACGAGGCTTCGCCAGTAAGTGGGAACTGGTGGCTCACCAGGAATGCCACGAAGTCACCCAATTATTCGAATGTGACGTTTGTCAGAGAACATTGGAAAAGAAGTACCAGTTGCTACTCCATCTGCAGACCCACGAACGTGCCGAGGTTCTGATACAAAAGTGCATGCAATCGTCCTCACGAGCAGCAGAGAAAAACCACTCGGATAACGAAAGCAATTCCAGCCATGACGAGGATGGTGACAGTGACGACGATGACACACCGTTGGCCGAGCGTATGCGACGAGAGCGTAAACGTCTGAAAGGCAGCAGAGAGTCAACAAGTAAGGAATCGGATCATGATCCCACGGCAGCTGCATCGACATCGAAAACCCAGAGTCGTCGTGCACGAAATGGAAAGTTGCCTGCGACGAATGAGTGGAAGTGTAAACTGAGCAAGAAGAGCTATACGCAGTCGAGTTCACTGAAGACGCACTTACGAAGTCATCGATCAGGCGATCGACCCTTCAATTGCGATCATTGCGGCAAAGCATTTTCCCGCAAGGGCATTCTTAACATACACCTTCGAGGACACAGCGCTCAGCTTCCATACCAGTGTCCACTGTGTGCGGGAGCTTTTACAACAAAGCATCAGTTAACGCAACACGTTGAAGATCATGACAAGGAACATGATACTTCTTCGGCTCCTTATGCATGCAAGCCGTGTGGCCTAAGTTTTCCAGCGATAGGTGAATATGCCAATCATTCGCTTAAAATGCACGTCCCCGCAAAAACATACCAGTGCGGaatttgtcaaacgaaatTCGAAGAGAAATTCAAGCTGCTTTTCCACCTGGAATTgcacaaaatacaaaagaatCCATGCAAGAAGTGCGGCcaaatgttttcaataaaGGAGGAACTACTGAAGCACATAAAGAGCCAGCACTTCGATAAGCGGAATCTGGACTATCAGTGCCCGGAATGCTCGGAGGGACTGTACGACATGAGAGACTTGAAACAGCATCTGAACGAGGTGCATGATGTGGACATTAAGGAACTGAACGCATGCGACATGTGCGGCGTAAATTACAAATCGCCGGCAGAATACTACAAACATATGCATGATCAGCACGACACCATCAGCAAATCCTGCAATGAATGTGGCAAATATTTCGACTCACGTCGGGCTTTCGATAAACACGTTCTGATGCATTACACTTAA
- Protein Sequence
- MFTWQRCATGRISLAKSKREAPAEVAADEDVRLDASVCRVCLHAKGTVPLFDGFGSDEQFRYCTLLEATEDDGLPIKLCQVCTNNMRISYDFRFQATYAEKYFRKTVFLPAPQKELDFNQGELLAVEDQLVLDENMQEIGKLLLEQNSAVVSVQDAAMNSACGGKGRKTYIEDLDSDSDGLSDHFAAAFVPPEEMEDNKGNIRDASRDETEQSATTKQAHKEERVSPLNDQENKSCPPTASSNRPSHNSSTNFANQLQTMSSHSQEELEKKCSTAKQKQNNSKEAKVECNICGTTFTHINSLKQHLMKHSGERPFQCEFCEKTFTRRTTLNIHRRLHTGDRPYHCDECICKFVTKDAKNRHKERVHSERAESKKYTFTCAICNEKFDSKFALQTHKRSLHTEDEKLKASPRKAETDKTKRKRIVVKPRRPLQMVDKDGNPLATVKYCGICQRGFASKWELVAHQECHEVTQLFECDVCQRTLEKKYQLLLHLQTHERAEVLIQKCMQSSSRAAEKNHSDNESNSSHDEDGDSDDDDTPLAERMRRERKRLKGSRESTSKESDHDPTAAASTSKTQSRRARNGKLPATNEWKCKLSKKSYTQSSSLKTHLRSHRSGDRPFNCDHCGKAFSRKGILNIHLRGHSAQLPYQCPLCAGAFTTKHQLTQHVEDHDKEHDTSSAPYACKPCGLSFPAIGEYANHSLKMHVPAKTYQCGICQTKFEEKFKLLFHLELHKIQKNPCKKCGQMFSIKEELLKHIKSQHFDKRNLDYQCPECSEGLYDMRDLKQHLNEVHDVDIKELNACDMCGVNYKSPAEYYKHMHDQHDTISKSCNECGKYFDSRRAFDKHVLMHYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -