Hrot008214.1
Basic Information
- Insect
- Heteromyza rotundicornis
- Gene Symbol
- -
- Assembly
- GCA_951394025.1
- Location
- OX596011.1:7458104-7461021[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.2 96 4.3 0.1 2 23 102 124 101 124 0.91 2 18 0.025 2 9.6 0.6 3 23 133 155 132 155 0.87 3 18 0.0087 0.7 11.0 1.7 3 19 169 185 167 188 0.92 4 18 0.035 2.8 9.1 1.3 2 23 229 251 228 251 0.94 5 18 0.0011 0.089 13.8 1.0 2 23 258 279 257 279 0.96 6 18 0.006 0.48 11.6 1.5 1 23 285 308 285 308 0.94 7 18 1.4e-05 0.0011 19.9 3.6 1 23 315 337 315 337 0.99 8 18 0.81 65 4.8 0.1 3 20 348 365 346 367 0.93 9 18 0.00047 0.038 15.0 0.5 1 23 386 410 386 410 0.91 10 18 0.0021 0.17 13.0 0.7 1 23 415 437 415 437 0.99 11 18 0.019 1.5 10.0 0.4 1 22 453 476 453 476 0.95 12 18 0.00073 0.059 14.4 1.6 1 23 492 515 492 515 0.97 13 18 0.0012 0.098 13.7 0.3 2 23 521 543 520 543 0.93 14 18 7.8e-05 0.0063 17.5 0.2 3 23 548 569 547 569 0.97 15 18 0.0052 0.42 11.7 1.0 1 23 575 598 575 598 0.95 16 18 0.0034 0.28 12.3 0.2 2 23 604 625 603 625 0.97 17 18 0.0049 0.4 11.8 2.2 1 23 631 653 631 653 0.96 18 18 0.0017 0.13 13.3 0.1 1 23 659 687 659 687 0.88
Sequence Information
- Coding Sequence
- ATGCCTGAGCGATTTGCCGATTGGGTAGTAACTAGGGAGATCGGTTCGACGCCATTGTCAACCACCCAAGAAGTGGTAATAAATCTAGGAAATATGGAGAACTTGGACGAAGCAAATATTGAAGCGGAAGACGAGGATGTCAAAGAGGAGTGGATAGAAATGGATGATTGTTCGCTGGAAATCCAATCTGATGGTTTGGATGATGAAAGCCACTCGGCTGACTTTGAAGTTATTGATGTGGGAAAATATCTTGATTCAGCCATTAATAGTAAATTAGAGGATGTGGATTTTCAGTGGACTAGTGAGTGCCGAGATTGTGGGGACCAGTTCGAAACTTTTCAAACGCTACTTGGCCACATCATAGCGAATcacaaaaatgaagaaaatcatagtttcTGTTGTATTGAGTGCAGTGAAGCATTTGGAAATTCAAAGTTACTAGCACGACACATTATACTCAGGCATTGTACTGAACATTTACATAGTTTACAGATTTATATAAATTGCCCAGATTGTGATTTGAGATTCTCAAATTTCATGCAGTTCAACAAACATTCCTGTTATCGCCTCTCCAAGCGGAAGTCTATAAAGCGTAATTACTGCAACAGCTGCCAACTGGAATTCGTCTCACTCACGCGGTTTgtctttcatttgcaattccATTTGTCGAAACGAAGACCAAAAGTTTGCCTGATCTGCGAGAGTTTCTTTAGTGACAACGACGAGTTTTTCCAACATATCCACTACAGTCATGAGCCTAGCGAAGCGGTGACCTGTTCAAGCTGCGATCGTAGATTCAATGACACAAATTCACTTGAATCGCATAAGCGAGCACACGATTTAAAAGTATCTTACGTTTGTGATTACTGTCCTGAAACTTATGAACAAAAGTGTTTGCTAGACAGCCACTTGTATAACAATCACAATGACAAGCCAAGGGATTTCCAGTGTgatatttgcaataaagtGTTTTCGAATCGTTCGGGCCATCGCCAGCACATGCGGCGTCATGAGCCTGAAGCTGATGTTCAGGTCTCCATCTGCAGCAATTGTGGCCTGATTGCCCGAGATGAATGTGAATTGAAGGCGCACACTGAGAACCAGAACTCCGAATGTTTCGGATCGTCTATAGTCGAGGAAATACTTTCCGTTGCATACACATGTGAATTTTGttcattggattttaaatttcctaGCGATTTAAAGAACCACAGAGCAACGGGCATCCACAATAATAAAATGTACGAATGTTTGTTTTGTAAAGCGGAATTCGATGATCTGAAGGGACTGCGTAATCATACCAAAACGCACAGGACTTATAATGCTTGGCTGATGGCATTTCCACTAGTCAAATTGTTCGTGTGCAATACGGAAGATTGCGCGGAATCTTATTCGCAGTGGAATGCTTTTCATAATCACCAGAAGCGCTgtcaacagcaaaaaaagGGCACGTGCCAGCAAGATAAGATCGAATTTAAATGTCAGTTTTGTGGCAAGGACTGCCCTTCGAAAATGTCACTTTCCGTCCACATAGCAAGAAGTCACAATAACAGAAATATTACTTGTCCCACATGCAAGGCATcgtacaaaaatgaaaagtcCTTGCAAGAGCATATCGATTACATGCATGTGCCGGTAGCATGTCTTTATTGCCCTAAAGTGATCAAAAACAAGCGAAATTTGGAAACACACCAGAGGATTGTGCACACCAACGAACATCGCTACTATTGCCAAGTATGCCAGAAGGGCTTCTACTATCGAAGCGAAAAAGAAGCACacgagaaaaatGTTCACCCCGATATCACGTTAAAATGTCCGGAGTGCACATTCAGCACAAATTATGCCAAATCACTGGATGTACACATGGCCATGCATAAGAAGGATTTGCAAttcaagtgtcatatttgttCCAAAGAGTTTGCACGCAAACTTATCTTGGATATGCATATAAAGCGACACGAAGTCCAGAAACAaTTCGTTTGTTCGCAACGCATTGTGAATGGCTGTGAGGCTTCGTTCATTTCCAATTATTTGCTAAATAAGCACATCCAATCTCAGCACTCTAATAAGAGTTTAAAGCCATATGCCAAACGTCAAAAAAGGCAGTCTATTGAATATATTGACTTGGAATATAGTGAGGATGCCGATGATCCAGAAGTGGTGGGCTTTAATTTTGTCACTGAAAGCGTAGACAATGACGTCATAGAATTCATAAACGACTAA
- Protein Sequence
- MPERFADWVVTREIGSTPLSTTQEVVINLGNMENLDEANIEAEDEDVKEEWIEMDDCSLEIQSDGLDDESHSADFEVIDVGKYLDSAINSKLEDVDFQWTSECRDCGDQFETFQTLLGHIIANHKNEENHSFCCIECSEAFGNSKLLARHIILRHCTEHLHSLQIYINCPDCDLRFSNFMQFNKHSCYRLSKRKSIKRNYCNSCQLEFVSLTRFVFHLQFHLSKRRPKVCLICESFFSDNDEFFQHIHYSHEPSEAVTCSSCDRRFNDTNSLESHKRAHDLKVSYVCDYCPETYEQKCLLDSHLYNNHNDKPRDFQCDICNKVFSNRSGHRQHMRRHEPEADVQVSICSNCGLIARDECELKAHTENQNSECFGSSIVEEILSVAYTCEFCSLDFKFPSDLKNHRATGIHNNKMYECLFCKAEFDDLKGLRNHTKTHRTYNAWLMAFPLVKLFVCNTEDCAESYSQWNAFHNHQKRCQQQKKGTCQQDKIEFKCQFCGKDCPSKMSLSVHIARSHNNRNITCPTCKASYKNEKSLQEHIDYMHVPVACLYCPKVIKNKRNLETHQRIVHTNEHRYYCQVCQKGFYYRSEKEAHEKNVHPDITLKCPECTFSTNYAKSLDVHMAMHKKDLQFKCHICSKEFARKLILDMHIKRHEVQKQFVCSQRIVNGCEASFISNYLLNKHIQSQHSNKSLKPYAKRQKRQSIEYIDLEYSEDADDPEVVGFNFVTESVDNDVIEFIND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -