Basic Information

Insect: Heteromyza rotundicornis
Gene Symbol: -
Assembly: GCA_951394025.1
Location: OX596010.1:25564724-25566975[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.9e-05 0.0015 19.4 0.6 2 23 198 219 197 219 0.96

2 11 0.00071 0.057 14.5 0.3 1 23 226 249 226 249 0.94

3 11 0.00013 0.01 16.8 0.4 1 20 263 282 263 284 0.95

4 11 1e-05 0.00084 20.2 5.6 1 23 302 324 302 324 0.99

5 11 2.1e-05 0.0017 19.3 5.1 1 23 338 360 338 360 0.98

6 11 1.3e-06 0.0001 23.1 0.9 1 23 366 388 366 388 0.95

7 11 0.00076 0.061 14.4 0.3 1 23 394 416 394 416 0.96

8 11 0.00074 0.06 14.4 1.0 1 23 422 444 422 444 0.96

9 11 0.0038 0.31 12.2 7.4 1 23 450 472 450 472 0.98

10 11 3.9e-07 3.2e-05 24.7 1.4 1 23 478 500 478 500 0.99

11 11 0.00041 0.033 15.2 0.1 1 23 506 528 506 528 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.9e-05	0.0015	19.4	0.6	2	23	198	219	197	219	0.96
2	11	0.00071	0.057	14.5	0.3	1	23	226	249	226	249	0.94
3	11	0.00013	0.01	16.8	0.4	1	20	263	282	263	284	0.95
4	11	1e-05	0.00084	20.2	5.6	1	23	302	324	302	324	0.99
5	11	2.1e-05	0.0017	19.3	5.1	1	23	338	360	338	360	0.98
6	11	1.3e-06	0.0001	23.1	0.9	1	23	366	388	366	388	0.95
7	11	0.00076	0.061	14.4	0.3	1	23	394	416	394	416	0.96
8	11	0.00074	0.06	14.4	1.0	1	23	422	444	422	444	0.96
9	11	0.0038	0.31	12.2	7.4	1	23	450	472	450	472	0.98
10	11	3.9e-07	3.2e-05	24.7	1.4	1	23	478	500	478	500	0.99
11	11	0.00041	0.033	15.2	0.1	1	23	506	528	506	528	0.94

Sequence Information

Coding Sequence: ATGTGTCGCACCTGCATGTGCAAGGACGACAACTCGCAGTTCCTGTCCATTTATGAAGTTTCGTCAGAAAACCAAGCAATGCCCATTGCCGAACTTTTGACCAGCACAACACCACAGCTACAGATTCAGGCAACAGATGAACTACCGAAAACGATTTGTAACCACTGCCTATGTAAACTTTCGGAATTGCATGGATTCCAGCAGATGTGTTTGCGCTCAGACACACACTTACGCAGTCTACTCGAGTACGGTGCTGTGGAAGCAAAATTTACACAAGTACATGAGCAATCTTCCTCTGCACCAGCGATTTCTGGCCTAGATTCAATGCACACTGGTCCGGATCCCCTACAGGACGCAAATGTCACAGCGGAGGAAATACATAATTACTTGAAATTGGAGTTGAGCGATAAAGAGGTAGCACTTCACTGCACGGATGACAAACCGAGTGAAACCAATGAGTctgtaaaaatggaaattaatagCTTAGCAGAAGTAGACGCGGAATCTGCTTTGTCGGACTATGATGACAATAGCAACGAGGGTGATGACAGCGACTGGGAGGAGAAGAATagCACTGGGTTGAACACAATTCCATGTCCCCAATGTggcaaaaaatttcgaaacaaTTTCCGTATCAATCGCCACATGAGTGTGCATGATGTTTCGACAAGAGCATATCCATGCCTGCAATGTAAATATCGTTTCTCTACGGCATCTATATTGCAGCGTCACATATCTGAGATCCACAatagtaaaaaaccaaaagcttTAACTAATCCGGAAGGCTACAAATGTGATAACTGTCCGCGTCGATTTGCCCAAGAAGAATCACTAAAGACACACAAGGAATCGCAATGCCAGGAGTCAGCAGAGACAGCTAATACGGAAGAGCTGCCACTCACATTCACCTGTGACTATTGTcgcaaaacatttaaaacatttaaaacactttTGCGGCATACACGAACTCACAAAGAGGTTCAGGCGCAAGAGGGCATAGAAGATAAACCATACATTTGCGAGTACTGTCAcaaagcCTTCCAGCAATCCTGTACATTGAAAGAACATATACGCACCCACACAGGGGAGCAGCCCTTTCTATGCTCCGAATGTGGCAAGGCATTTAACAGCTCCAGCAACATGAAGCAGCATTTGCTCCGTCATGCCGGTGTGAAGCGTTATGAATGTCCCGAATGTCCGAAAAAGTTCCCCTGTCTCAGCGATTTGGCTTCCCATAAAGCCGTTCATAACAAGTGGAAGCCCCACATTTGCGATATCTGCAGTGCAGCCTTTGGCAAGCCTTATCAATTGAAGAAGCATAAAATGTACCACAATGGCGATAAGCCGCACAAGTGTGAATATTGCGAGATGAGATTTGTCTGCGCCGATCACATGCGTCGTCATATGCGAACACACACCGGAGAGAAACCgtataaatgtaaatattgcAGTCGCGCATTTGCCCAGAGCAACGATTTGATCAAGCATTTACGCTCTCATTTGGGCGAGAATGTGTACAAATGTGAATTGTGTCCACGAGCATTCCGTATGGCTACCGAGCTTCGCGAGCACTTTGCCGCACATAAAAACGATGATGAGGAAACGCGACAGCAGAACCTAATCGCTTTAATGGAGGAGGAAGCCAAACTGTGCATTACTTTGCCTAGTAATTGCACAAGACGCAATAAGCGGGAGCCTGAAGCGAAGTTAGACGCCTAA
Protein Sequence: MCRTCMCKDDNSQFLSIYEVSSENQAMPIAELLTSTTPQLQIQATDELPKTICNHCLCKLSELHGFQQMCLRSDTHLRSLLEYGAVEAKFTQVHEQSSSAPAISGLDSMHTGPDPLQDANVTAEEIHNYLKLELSDKEVALHCTDDKPSETNESVKMEINSLAEVDAESALSDYDDNSNEGDDSDWEEKNSTGLNTIPCPQCGKKFRNNFRINRHMSVHDVSTRAYPCLQCKYRFSTASILQRHISEIHNSKKPKALTNPEGYKCDNCPRRFAQEESLKTHKESQCQESAETANTEELPLTFTCDYCRKTFKTFKTLLRHTRTHKEVQAQEGIEDKPYICEYCHKAFQQSCTLKEHIRTHTGEQPFLCSECGKAFNSSSNMKQHLLRHAGVKRYECPECPKKFPCLSDLASHKAVHNKWKPHICDICSAAFGKPYQLKKHKMYHNGDKPHKCEYCEMRFVCADHMRRHMRTHTGEKPYKCKYCSRAFAQSNDLIKHLRSHLGENVYKCELCPRAFRMATELREHFAAHKNDDEETRQQNLIALMEEEAKLCITLPSNCTRRNKREPEAKLDA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -