Basic Information

Insect: Heteromyza rotundicornis
Gene Symbol: -
Assembly: GCA_951394025.1
Location: OX596011.1:84430298-84432576[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.2e-05 0.00098 20.0 2.0 2 23 297 318 296 318 0.97

2 11 3e-05 0.0024 18.8 2.6 1 23 325 347 325 347 0.98

3 11 4.9e-06 0.0004 21.3 1.9 1 23 353 375 353 375 0.99

4 11 4.9e-06 0.00039 21.3 1.3 1 23 382 404 382 404 0.98

5 11 0.00012 0.0094 16.9 0.4 1 23 410 432 410 432 0.96

6 11 0.00011 0.0087 17.0 0.2 1 23 438 460 438 460 0.97

7 11 7.5e-06 0.0006 20.7 0.8 1 23 466 489 466 489 0.97

8 11 0.00015 0.012 16.5 2.7 1 23 495 518 495 518 0.95

9 11 9.1e-06 0.00073 20.4 1.5 1 23 524 546 524 546 0.98

10 11 0.00012 0.0097 16.9 0.5 1 23 552 574 552 574 0.96

11 11 0.029 2.3 9.4 0.3 1 22 580 601 580 604 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.2e-05	0.00098	20.0	2.0	2	23	297	318	296	318	0.97
2	11	3e-05	0.0024	18.8	2.6	1	23	325	347	325	347	0.98
3	11	4.9e-06	0.0004	21.3	1.9	1	23	353	375	353	375	0.99
4	11	4.9e-06	0.00039	21.3	1.3	1	23	382	404	382	404	0.98
5	11	0.00012	0.0094	16.9	0.4	1	23	410	432	410	432	0.96
6	11	0.00011	0.0087	17.0	0.2	1	23	438	460	438	460	0.97
7	11	7.5e-06	0.0006	20.7	0.8	1	23	466	489	466	489	0.97
8	11	0.00015	0.012	16.5	2.7	1	23	495	518	495	518	0.95
9	11	9.1e-06	0.00073	20.4	1.5	1	23	524	546	524	546	0.98
10	11	0.00012	0.0097	16.9	0.5	1	23	552	574	552	574	0.96
11	11	0.029	2.3	9.4	0.3	1	22	580	601	580	604	0.90

Sequence Information

Coding Sequence: ATGGCAGAGGCCAATTTGATTGGTGTTGATGAATATGTCCAACAGGacaaatgttttctttgtgaTCATGAGTTCGACGACGGTGAGGAACCATGGTTGCTGTTCGAAAAACGTGAGCCTCCATTCGAGTCTCTATCGTCAGTTCTATCGTCTGCTCTTGGCAGAGAATTGGAAGCACAGTCGAGTCACTCGACAGTACTTTGTGACGCTTGTAACGCCTCTGTCCTGGAGTTTGAAAATTTGGAACAGCGGTTCTGCGAACTGCGCTACCGAATTCTGACCGCCTACAATAAAACTGCGCAGCGCAATCACCTAGCTCTGATTGCCATTGAAATCAATGGCATACTGCAGAGGGAGGACGTGAAAATCGAAGATGCTGAAGAAGTAATTATTTCGGGGGTTGTCGACGATTTCATAGAAGAAGGACAATTCACCTGTTCGCAGTTAACTTCGGAAGCAGCTGCTGATGCCTTAGTAGAGGAAGTGTACGATGATGAGGATAACTTGGAATTGGCGTCTTTCATCGTTACCCCGGATTCTGAGAGCAAATATATTAGGATACATAATGTGATTAAAAACGAGAATCTAGATACTCTGGAAACGCCAGGCACATTGGATCTTTCGTGCCTGGAAATTGGCGAGCACGAAGTTAACATTTACGACGACGATATCATCGAGGGCAGCCAGACCATTTACAGCGACGAGGAAGCCAGTGTAGATGACAAGTCAGTGCCGGGatacagcagcaacagcaatcaCACCTCCGATAATTTGTTCACCATTGACATCGATGAGGACGCTAATGAAGACCAGGTTGACCCAGATAGCACACTACGCGATATAGAGGAGCAGCACTTCAGTCCCACTAGTGGTCAAGCCAGTAAGCTGAAATGTGAAACTTGCCAGCGCACTTTCAGCAACCAGCGTCTCCTGCGCGTGCATAAACGCATACATTACGGCAGTGCCAAACAGTTCGAATGCAGCGAGTGCCACAAGAAGTACAGCTCGAAGAATTTGCTCGACGAACATATGAACATGCACACTGGCGAGCGACCGTTCAAGTGCCCGAACTGCTCTAAGGACTTCGCCTCCAAGTATACACTGCATGCGCACATAAAAATCCACACGGAGCGCCAGCGTCCCTACCAGTGTGATAAGTGCGACAAGGCCTTCCTCAACCAACAGAATCTGACGCAACATATGAAATTGCACGTGGGCGTCAAGGCATTCATCTGTGACATTTGCTCCAAGGCCTTCGGAACACAGCACAATCTCGACGTGCACAAGATCGTACACTCTGGCCAGCGGCCGTTCATTTGTCGCACTTGTGGCAAGGCATTTGCGCGACGCGCCGAAATCAAAGACCACGAACGCATCCACACTGGCGAAAAACCATTTCAATGTGAATATTGTCCTTTGGCGTTCGCCCAGCGTTCGAACCTGTCGTCGCACAAAAAGTCGACGCATTTGAATGAGAAGCTGCACCGGTGCAAGCAGTGCGATCGTTCGTTTAAGCGTCGCCGTCTGCTCGACTATCACATCCAGGCCGCTCACACCGGAGAACGACCTCAtaaatgtgaaatatgtgGCGCGGGCTTTGTCTATCCCGAGCACTATAAGAAGCACTTGCGCATTCATTCGGGCCAAAAGCCATTCGCCTGCGAAGTGTGTGGAAAGCAATTCAACAGCCGCGATAATCGCAATGCCCACCGCTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCATCGAGTGTGGTGCGGGCTTTATGAGGAAACCCTTGCTGTTGGCCCACATGAAGCACTCGAAACATGCTACCGGCATGGACACCATCATTGTCAACCAGCCCCAGATCAGCGGCCCTGGTCGGTTGTCGCTTTCCGGTTATGAAGTGAATGAAGCCGACGAAGTCGGCAACATCCGCCGAatcgaagaagaagaggaCACGTCATCCATGGTGGACACAACCGAGTCGCTCGAGAACATGATGCAGCGCGCCGACAGTATCTTGGCACACGACGACCGCGATGCCATCACCAGCGTCACGGGCCAGCTCATCAAAGACCAAATTGGCGATGTCAAGTACTTGCAATTTGAGGATCTCGACCGAGATGGCCATCAAACGCTGACGTGGGTGGATATTGGCGATGATAGGGATTAG
Protein Sequence: MAEANLIGVDEYVQQDKCFLCDHEFDDGEEPWLLFEKREPPFESLSSVLSSALGRELEAQSSHSTVLCDACNASVLEFENLEQRFCELRYRILTAYNKTAQRNHLALIAIEINGILQREDVKIEDAEEVIISGVVDDFIEEGQFTCSQLTSEAAADALVEEVYDDEDNLELASFIVTPDSESKYIRIHNVIKNENLDTLETPGTLDLSCLEIGEHEVNIYDDDIIEGSQTIYSDEEASVDDKSVPGYSSNSNHTSDNLFTIDIDEDANEDQVDPDSTLRDIEEQHFSPTSGQASKLKCETCQRTFSNQRLLRVHKRIHYGSAKQFECSECHKKYSSKNLLDEHMNMHTGERPFKCPNCSKDFASKYTLHAHIKIHTERQRPYQCDKCDKAFLNQQNLTQHMKLHVGVKAFICDICSKAFGTQHNLDVHKIVHSGQRPFICRTCGKAFARRAEIKDHERIHTGEKPFQCEYCPLAFAQRSNLSSHKKSTHLNEKLHRCKQCDRSFKRRRLLDYHIQAAHTGERPHKCEICGAGFVYPEHYKKHLRIHSGQKPFACEVCGKQFNSRDNRNAHRFVHSDKKPYECIECGAGFMRKPLLLAHMKHSKHATGMDTIIVNQPQISGPGRLSLSGYEVNEADEVGNIRRIEEEEDTSSMVDTTESLENMMQRADSILAHDDRDAITSVTGQLIKDQIGDVKYLQFEDLDRDGHQTLTWVDIGDDRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -