Basic Information

Insect: Heteromyza rotundicornis
Gene Symbol: -
Assembly: GCA_951394025.1
Location: OX596013.1:47243138-47252041[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.8e-05 0.0031 18.5 2.1 1 23 544 566 544 566 0.97

2 15 1.6e-05 0.0013 19.6 0.4 1 23 572 594 572 594 0.97

3 15 0.0014 0.11 13.6 0.5 1 23 600 622 600 622 0.95

4 15 2.7e-05 0.0021 18.9 3.1 1 23 628 650 628 650 0.97

5 15 6.1e-05 0.0049 17.8 4.7 1 23 656 678 656 678 0.99

6 15 0.00011 0.0089 17.0 5.7 1 23 684 706 684 706 0.97

7 15 5.4e-07 4.4e-05 24.3 4.3 1 23 712 734 712 734 0.98

8 15 1.9e-07 1.6e-05 25.7 2.4 1 23 740 762 740 762 0.97

9 15 0.00011 0.0091 17.0 6.7 1 23 768 790 768 790 0.97

10 15 3.1e-06 0.00025 21.9 7.9 1 23 796 818 796 818 0.98

11 15 1.2e-06 9.4e-05 23.2 7.7 1 23 824 846 824 846 0.98

12 15 0.00036 0.029 15.4 9.5 1 23 852 875 852 875 0.95

13 15 0.00031 0.025 15.6 0.5 1 23 881 903 881 903 0.97

14 15 0.0014 0.11 13.6 4.4 1 23 913 935 913 935 0.98

15 15 1.6e-05 0.0013 19.6 1.6 1 23 941 964 941 964 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.8e-05	0.0031	18.5	2.1	1	23	544	566	544	566	0.97
2	15	1.6e-05	0.0013	19.6	0.4	1	23	572	594	572	594	0.97
3	15	0.0014	0.11	13.6	0.5	1	23	600	622	600	622	0.95
4	15	2.7e-05	0.0021	18.9	3.1	1	23	628	650	628	650	0.97
5	15	6.1e-05	0.0049	17.8	4.7	1	23	656	678	656	678	0.99
6	15	0.00011	0.0089	17.0	5.7	1	23	684	706	684	706	0.97
7	15	5.4e-07	4.4e-05	24.3	4.3	1	23	712	734	712	734	0.98
8	15	1.9e-07	1.6e-05	25.7	2.4	1	23	740	762	740	762	0.97
9	15	0.00011	0.0091	17.0	6.7	1	23	768	790	768	790	0.97
10	15	3.1e-06	0.00025	21.9	7.9	1	23	796	818	796	818	0.98
11	15	1.2e-06	9.4e-05	23.2	7.7	1	23	824	846	824	846	0.98
12	15	0.00036	0.029	15.4	9.5	1	23	852	875	852	875	0.95
13	15	0.00031	0.025	15.6	0.5	1	23	881	903	881	903	0.97
14	15	0.0014	0.11	13.6	4.4	1	23	913	935	913	935	0.98
15	15	1.6e-05	0.0013	19.6	1.6	1	23	941	964	941	964	0.96

Sequence Information

Coding Sequence: ATGAATACTGAACATGCAACAGCAACTCCTGGTGAGTCAgcgacagcagcaacagctACAATAAATCGAAATGAACCAAATCAGCAACCACAACTCAATCGACATTCACCTCAGCAACAAATCGACCatccacagcaacaacaacagcaccaacAGCAATTGAATGAGtCGCGAGctacacaacagcaacaacgacaAAAATCGACCTCAgctcaacagcaacaacaatcacaacaaTTAATGTCTACATCTTTGGATGCCGCCAATGTCGCGGCCGTTACACCGGCAACtgccattgttgttggtggcaATGGCGATGTGCTAGCCACGCATCATATTAATCATCATGCTACTAGCGGCTCTGCTGTTGGTGCCAATCAAACGATTTGCGCCTCCACAACCACCACAACTGCTGCTGGTGCTGGAATTTCGAATGTTGCCAAAACAAGTCAACAGCTAAcaacatcatcaacatcaacacTAACGTTGGTACCGtcgcaacagcagcagcagcagcaacaagaaGCAATTGCTGCcactacaactacaacaacactcATACCACAAGCACAAAATTTGGGCAAATACTGGGTTGTAACAGGGTTGTACCAAGGGCCTGGACAATCAGCTCCATATAACATTGGTGTGACTCAGGCGTCAACCGTACCTACTTTGGCGCAGCAGATCGCAACACAAGTCCACAAACAGACAGCCGTTACAACAGCAACTACAGTTGCCACTGCTAAATCGGCTATCAGCAGCAGTGCTGGAGCGTCGCTGCATATACCACAACCGATCCTAACGAATGCTGCGTTAAGCCAACAGCTGCCGAACGGCACAATAATCACAGCACAGCAGCGACACCCAATAGTAGCCgaccagcaacaacagcaacaaattcACGTGCATGCTGCAATCAACGCAACTGATGACAAtcgacagcagcagcaacacttatcacagcaacaacagcatgtAGCTGCCatacaacagcagcagcaacaacaacagcaacagctcCAAGATACCGTTAAAGAGGAAAAACCCTTTGCAACCGCCAACGGTAAaataaaccaacaacaaataattatGCAACACGTCAGCGCAGCTGGTGGCACGCCCACAACTTCGGGTGCCACCACCATAACATTGGGCGCCcccaaaaccgaaatcaaGGAAGATGGCAGCATGGGCAAACCGCCGCCCGGCATTGAAATGTACAAAGTCAATATCGAGGATATTTCGCAGCTTTTCACGTACCACGAGGTTTTCGGAAAAATGCACGGCGATGTCATGAACCATCAGTTGGCCGCACATGCAGTTCCCGGGCCGCCACCACAATCGCATGTCGGCAATGCCTCGAATAATGCCGCTGTAGCTGCAGTGGTAGCCAGTGCCAATGCTGCCGCTGCGGCGGCtgcagctgctgctgccaaTACCACTGCCGGGGCAGCACCAACCACAACGGCCAACCTAACGACTGCGATTAGCAGTAGTACTACGGCAACGGCTACCACGACCGTCACCGGCGAACTCCTCATGCCCAAAATGGAGGGCGGGATTCCCGGGGTCGATCAAACAACCACCATAACCCTGGCGCCCGATGGCACACCCATTGCCACTGGCACACACGTCTGTGACATTTGCGGCAAGATGTTCCAGTTCCGCTACCAGCTGATTGTGCATCGACGCTACCACAGCGAACGCAAGCCCTTCAATTGTCAGGTGTGCGGACAGGGATTCACCACCTCTCAGGACCTAACGCGTCACGGCAAGATACACATCGGCGGCCCGATGTTTACGTGCATCGTGTGCTTTAATGTATTCGCAAATAACGCCAGTCTCGAGCGTCACATGAAGCGTCACTCGACGGACAAGCCGTTCGCTTGCACCATCTGCCAGAAAACGTTCGCGCGCAAAGAGCACCTGGACAACCACTTTCGGTCGCATACCGGCGAGACACCGTTCCGCTGCCAGTACTGCGCCAAGACGTTCACACGCAAGGAGCACATGGTCAACCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTCAACCACTACATGTGGCACACTGGGCAAACGCCACACCAATGTGACGTGTGCGGCAAGAAGTACACTCGGAAAGAGCATCTGGCCAATCACATGCGCTCGCACACCAACGACACACCGTTCCGTTGCGAGATTTGCGGCAAGAGTTTCAGCCGCAAGGAGCATTTCACCAATCACATTTTGTGGCACACAGGCGAAACCCCCCATCGCTGTGACTTCTGTTCGAAGACTTTCACGCGCAAGGAGCATCTGTTGAATCATGTCCGCCAGCACACTGGCGAATCGCCGCATCGCTGCACCTATTGCAAGAAAACGTTTACGCGCAAGGAGCACCTCACGAACCACATTCGTCTGCATACGGGCGATTCGCCACACAAGTGTGAATACTGTCAGAAGACGTTCACGCGCAAGGAGCATCTCAACAATCATATGCGCCAGCACTCGAGTGACAATCCGCATTGCTGTAATGTCTGCAATAAGCCCTTCACGCGCAAGGAGCATCTCATCAATCACATGTCCCGTTGCCACACCGGCGATCGTCCGTTCGCCTGCGAAACGTGCGGCAAGTCGTTCCCCCTCAAGGGCAACCTTTTGTTCCATCAACGCAGTCACACCAAGGGCCAAGAGTGTGAGAGACCCTTCTCGTGCGAGAAGTGccccaaaaatttcatttgcaagGGTCATCTCGTTTCGCATATGCGGTCCCATTCGGGTGAAAAGCCACACGCCTGCACCCTGTGCAGCAAAGCTTTTGTGGAGCGGGGCAATTTGAAGCGTCACATGAAAATGAATCATCCCGATGCAGTGATGCCGCCACCGCCGGTGCCGCATCCACAAATACCGGCCGGCATGTTGACATCGGTGAAACAGGAAATAAAGCCAATTATAATTCCTCATCAAACTCCGACAATGCACACTATACAGCAAATCACTGCGGGCGCTGCTGCTGCGGCGGCGGCGAATGCTGCTCAATTGGTGCCCGGATTGGCGCCGGGTTTGGCACCAGGATTAGCGACCGGCTTGGCACCCGGACTGGTGCCGTTGGTCACGTCTACCATTACATCGCATAATAgtcaaaagcaacaacagcagcaacaacaacaacagcagcaacaggcacaccaacaacatcagcaacaggtgcaacaacagcaacagcatcaacaacagcaacaacaacaacaacagcagcagcaacaacaacagcagcagcaacaacagcagcagcaacaacaacaattgcaacagcagcaacagctgCTACAATTGTCAATTCAACATCATCAGCAACAGGAACAGCATCGCcagcatcagcagcaacaacaacagcaacaacagcagcagcagcaacaacaacagcagcaacaacaacaacatcatcagCAAACCCAAgctcaacagcagcaacaagctCATGCACAaccgcagcaacaacagcagcagcaacagccacCACAAGTGCCGATCGCCTTGATACAAGCGGATCCGAGTGCGCTCGCACGCGCCGCCATGCAATTGCAACATTTGCCCGCCAACGTCGAGCAGCATCCGGTGGTTTACTAA
Protein Sequence: MNTEHATATPGESATAATATINRNEPNQQPQLNRHSPQQQIDHPQQQQQHQQQLNESRATQQQQRQKSTSAQQQQQSQQLMSTSLDAANVAAVTPATAIVVGGNGDVLATHHINHHATSGSAVGANQTICASTTTTTAAGAGISNVAKTSQQLTTSSTSTLTLVPSQQQQQQQQEAIAATTTTTTLIPQAQNLGKYWVVTGLYQGPGQSAPYNIGVTQASTVPTLAQQIATQVHKQTAVTTATTVATAKSAISSSAGASLHIPQPILTNAALSQQLPNGTIITAQQRHPIVADQQQQQQIHVHAAINATDDNRQQQQHLSQQQQHVAAIQQQQQQQQQQLQDTVKEEKPFATANGKINQQQIIMQHVSAAGGTPTTSGATTITLGAPKTEIKEDGSMGKPPPGIEMYKVNIEDISQLFTYHEVFGKMHGDVMNHQLAAHAVPGPPPQSHVGNASNNAAVAAVVASANAAAAAAAAAAANTTAGAAPTTTANLTTAISSSTTATATTTVTGELLMPKMEGGIPGVDQTTTITLAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAVMPPPPVPHPQIPAGMLTSVKQEIKPIIIPHQTPTMHTIQQITAGAAAAAAANAAQLVPGLAPGLAPGLATGLAPGLVPLVTSTITSHNSQKQQQQQQQQQQQQAHQQHQQQVQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQLQQQQQLLQLSIQHHQQQEQHRQHQQQQQQQQQQQQQQQQQQQQQHHQQTQAQQQQQAHAQPQQQQQQQQPPQVPIALIQADPSALARAAMQLQHLPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -