Hrot013986.1
Basic Information
- Insect
- Heteromyza rotundicornis
- Gene Symbol
- lola_1
- Assembly
- GCA_951394025.1
- Location
- OX596011.1:83952986-83955433[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-11 8.8e-08 32.3 0.0 3 45 433 475 431 475 0.90 2 2 1.3 3e+03 -1.4 0.6 4 20 570 586 570 586 0.90
Sequence Information
- Coding Sequence
- ATGGGTGgtccaccaccaccgccacagCCGCTGGCCACGGAAGGTCAAACCTATTGCCTGCGCTGGAACAATCACAAATCGAATTTGGTTGAAATACTCGATGCGCTCATTAAAGTCGAGAGCTATGTGGACTGCACCATTGTCGTTGACGAGCAGGTGCAATTCAAGGCACATCGCGTCGTTCTCGCAGCCAATTCGCCATATTTCCAATCGATACTTCAGGACGTGCCAATGGATCATTGCAGCATAATATTTCCCGGCGTCAAAGCATTCGAGATGCGTGCTCTGCTCGAGTACATGTATACCGGTGAGGTCAACGTAACGCAGAGTCAGATCCCGAAGATAATGCGCATTGCTGAGGAGCTTGAGGTGAAGGGACTCTTCGATATGGCCGATTTGAAGgagaaattcaataaattgaaCGACGAGCATGCAGAGCGCGCTGGCGGTAATCCATATGCCAGTTCGACGGCGCCCACCGCACCGTACTCTTCGGCCGCCACATCGTCATCAGCTTCATCATCGGCGACGGCGGCCGCAACTGCAGCTGCGCTGAATGGATCTAAAGATTATGCAGATGACCGCCATGACCACCATCACCACCAACACAATTCTTCATCCGTGATCTCAACCTCATCGAATATTTCGCCATCGGCTGCGCCATCGAGTAGTTCTTCACCGCCTTACAGTAACTACAAGTCGCCCTATACCAATCTGTACACAAAGTCACCGGGACCCTCGACAACGACTGGCGCCCAAACAGCCACCACCAGCTCCGCACAGACACCAACACATTCGCAGTCACAGCAATCAAGTGCCGAACGGGGCGGTCAGTGGCCACTATCGCCATCTGCTGCAGCCGCTGCCGCCATGTTGAGTTCCGTTTATGAGTCTGCACCCGATAATAATCCGCTCAAGCGCAAGAAGATCTCATCACTATCCAGTATGTTAATGAATCGCGACACACCCATCTTACGTAATGTCTTGGCGCAAGCCAATCCCGCCGATTCGTCCCAGGCCATGCCATTGTTGCCCGGTGCCTCTTCAAAGGCCGAGAAAACGTCAGCAGCCGAGaaaagctccccacacactgcTGGAACACACAACAATAACCACAGCTTCAATGGCTCAGACTACAGCAGTGATAAGAAATACCATGACGAGCCACATTCGCCCTATACCGATCGCTCGTTCGAGGATGACGGCTTCGATGCTAAGGGCAATTTCGGCGGTAACTTCGGTGCCAATGCAGCCAATCAGAAACCGGAATGGAAGCGCTATAAGCAGTACACCCGCAACGACATTATGTCCGCCATACAGTGTGTCCGCGATGGCATGAGTGCCCTGCAGGCCTCACGTAAGTTTGGCGTGCCCTCGCGCACTCTCTACGACAAAGTCAAGAAGATGGGCATCACCACTGGCCGGCCTATGAATCGTACAATGAAACGCAGCCCAAGCAACGTTGAATCATCTGCGGCATTCCCTTATGCTCACGGCTATGGCCAATCGGAGCCATTACTCTCGTCCATGCATGATGAGCGTGGCGGAGAACCCAAGGATCTTGTGCACCGTGGTGATCACCATCATCACCACATGCCACCCACCATACCACATCCGGCTGCAGCGCTGCTCGATCATGCCTTCTTACAGCAGGCTCTAGAGAATCGTAGCGGCGACATAGCTGGCCGTGAAGCGCTCCATGCCATGGCTTTGGCAGCGGCCGCACATGCTGCAGCAAATCGTCGCATGTCGACCAGCCCCGGTCCAAACGGGCATTCAGCTCGAGCACGGTCGCCTAGTCCCAGTAATTTCGCCTTGAAATATGCACGCCAGCAAAGTGAGCACGATATGCTGctggagcagcagcagcgagaAAAGGAGCGTCGCATGATCGAGAATGACATGGAACGGGAGAGGGCCGCAATGGAAATGGAGCGAGAGCGTGAACATGAACGCGATGCTGACGACGAGGATGATCATGTCGAGGATTTGTCTGTGGCACGAAAAGACTGCATTTCAACGGAGACCAGACAACGTTCTGACTCACCACCATATTCGCCAGGCATACGACTAACACCGACAACGGCTAGCGGTGAGAATGGTAACGGTGTCATAATGCCTCCTATGAGCAACAAGCTGTCAGCAGTTAATGTTAACagccacagcagcagcaatagcAATAGCAGCGACGACTTCAACGAATCGACCATGAAGCGTGAGCTGATTATCGATGAAGGACGTGCTGACTGA
- Protein Sequence
- MGGPPPPPQPLATEGQTYCLRWNNHKSNLVEILDALIKVESYVDCTIVVDEQVQFKAHRVVLAANSPYFQSILQDVPMDHCSIIFPGVKAFEMRALLEYMYTGEVNVTQSQIPKIMRIAEELEVKGLFDMADLKEKFNKLNDEHAERAGGNPYASSTAPTAPYSSAATSSSASSSATAAATAAALNGSKDYADDRHDHHHHQHNSSSVISTSSNISPSAAPSSSSSPPYSNYKSPYTNLYTKSPGPSTTTGAQTATTSSAQTPTHSQSQQSSAERGGQWPLSPSAAAAAAMLSSVYESAPDNNPLKRKKISSLSSMLMNRDTPILRNVLAQANPADSSQAMPLLPGASSKAEKTSAAEKSSPHTAGTHNNNHSFNGSDYSSDKKYHDEPHSPYTDRSFEDDGFDAKGNFGGNFGANAANQKPEWKRYKQYTRNDIMSAIQCVRDGMSALQASRKFGVPSRTLYDKVKKMGITTGRPMNRTMKRSPSNVESSAAFPYAHGYGQSEPLLSSMHDERGGEPKDLVHRGDHHHHHMPPTIPHPAAALLDHAFLQQALENRSGDIAGREALHAMALAAAAHAAANRRMSTSPGPNGHSARARSPSPSNFALKYARQQSEHDMLLEQQQREKERRMIENDMERERAAMEMEREREHERDADDEDDHVEDLSVARKDCISTETRQRSDSPPYSPGIRLTPTTASGENGNGVIMPPMSNKLSAVNVNSHSSSNSNSSDDFNESTMKRELIIDEGRAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00797869;
- 90% Identity
- iTF_00797869;
- 80% Identity
- iTF_00797869;