Hrot006456.1
Basic Information
- Insect
- Heteromyza rotundicornis
- Gene Symbol
- -
- Assembly
- GCA_951394025.1
- Location
- OX596010.1:86657280-86658876[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.9e-14 4.3e-11 42.9 0.0 4 44 315 355 313 356 0.92 2 3 0.014 31 5.0 0.0 26 37 384 395 381 401 0.83 3 3 4.3e-18 9.6e-15 54.6 0.0 4 41 424 461 422 463 0.92
Sequence Information
- Coding Sequence
- ATGAACAATCTGAAGTGGATGGGGCATTCTACGACAATTTTCGACATTCAGAAGAATTTACGCGACGACCCAGCTTCCTGCGATGTTACACTCTCCGCCAAGGGACATTCGGTAAGGGCACATCGCTTTGTGCTCTGCTCCTGCAGTGATTTGCTGCGGGCACTGTTGGCGGAAGTACCGAATGGCGAGGAAACCACGATTGTAATACCCGACATCAAAGGAATCCTCCTGGAAACCGTACTCGCCTTCATATACATGGGCGAGACTTCTCTTAGCTCAACAAATTTGTCCGAGTTTCTGGAGGCAATCAATATTTTGGGCATCAAATCGGCCATTAGTTTCGAGTGTAATACGGCCACTTTGGCATCGGCCGCAGGCACTTCGCAGACACTGAAAACCATAGCCGGAATTCCGATTGTGCAAGAAGAGCTAATTGAACAGGACAACAACATGGTGACACAAAAGATCGAGACACAGACGCAGCAAAATGTCATATCCGACCAACAGTCGTCGTCGCGCGATATGGAATTTCTCGATGTATACAATGAGCCGCAGCATAAAATCACATATTTTGAACACGTTGCGGGCAGCGGCGCTAGTGCCAATGAATTCATTCTCACGGAGAACTCGGGCACATTTACTCTCACACAGAATGCCAAACTGGAGACTACCACGAGCAGCGATTGCGGCAAAATGGACGAAACTGAGGACGACGTCGATGCCGATTCCCACATAATCGAGGAATACAGCAGTGGCGGCGAGCCAATTATTGAAGTTGACGAAAACGGGGCGACAGCCATGTCGACGCCGACTACCAGTACACCCATCATACAACTCAAGAAGATGATGCAGGTCGGCAAGATCAAGGTGGAAGTTGGCGACCCACTGAACACGCCCACCGGAAGCTATGCGATGCTGAACAATAGCCGCCCATTCGACAGTTCGCTGAGTGCGGCCGTTGACGCTGTCATTTTGGAGGGTTTGAGCCTGCAGAAGGCAGCACACAAGTACGAAATATCCAAGACCGTGTTGTGGCGCCGCGTCCGCCAGAGTCCCAAATACATGAAGATGCCGCGTGAAAATCCAGTGCTCTCCTTGGCATACGAACGACTTAAGGCGGGCGAGCCACTGAAGAGCATTAGTCGTGAATTGGAGATACCGATGTCGACGCTGCATCGCCACAAAGTGCGTCTGGCTCAGCAGGGCCGCTTGCCCGAATATGTAACATTCAAGAAGCGCGACTCCATCACCAGAGAAGAACTGAGGCTGAAACTGGCCAAAGCGGTACACGCCTGTGTCCACGAGGGCATGTCGCAAAACCATGCCGCAAACATATATGACATACCCAAGAGCACTTTGTGGCGCCATCTACAGAAACGAGTCGCCGAAGCGGAATTGTCGCAAAGTCTGGAAGGACACAACAACATGCACAATATCCACAATATCATTAATATCAAGGAAGAAGTAATTTTGTCGTAA
- Protein Sequence
- MNNLKWMGHSTTIFDIQKNLRDDPASCDVTLSAKGHSVRAHRFVLCSCSDLLRALLAEVPNGEETTIVIPDIKGILLETVLAFIYMGETSLSSTNLSEFLEAINILGIKSAISFECNTATLASAAGTSQTLKTIAGIPIVQEELIEQDNNMVTQKIETQTQQNVISDQQSSSRDMEFLDVYNEPQHKITYFEHVAGSGASANEFILTENSGTFTLTQNAKLETTTSSDCGKMDETEDDVDADSHIIEEYSSGGEPIIEVDENGATAMSTPTTSTPIIQLKKMMQVGKIKVEVGDPLNTPTGSYAMLNNSRPFDSSLSAAVDAVILEGLSLQKAAHKYEISKTVLWRRVRQSPKYMKMPRENPVLSLAYERLKAGEPLKSISRELEIPMSTLHRHKVRLAQQGRLPEYVTFKKRDSITREELRLKLAKAVHACVHEGMSQNHAANIYDIPKSTLWRHLQKRVAEAELSQSLEGHNNMHNIHNIINIKEEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00797892;
- 90% Identity
- iTF_00797892;
- 80% Identity
- iTF_00797892;