Htit008242.1
Basic Information
- Insect
- Hetaerina titia
- Gene Symbol
- ush
- Assembly
- GCA_037158775.1
- Location
- CM073768.1:88283718-88302476[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0058 4.8 10.5 0.0 1 20 939 958 939 960 0.93 2 9 8.4e-05 0.07 16.2 2.1 1 23 1142 1164 1142 1164 0.98 3 9 0.042 35 7.7 1.0 2 21 1261 1280 1261 1281 0.92 4 9 0.6 5e+02 4.1 3.0 2 21 1738 1757 1737 1758 0.90 5 9 0.031 26 8.2 0.0 1 21 1838 1858 1838 1859 0.93 6 9 9 7.5e+03 0.4 0.1 2 23 1912 1933 1911 1933 0.92 7 9 0.0023 2 11.7 0.8 1 23 1941 1963 1941 1963 0.98 8 9 0.0012 1 12.6 0.8 1 23 2038 2061 2038 2061 0.95 9 9 1.4 1.1e+03 3.0 0.4 2 21 2296 2315 2295 2316 0.91
Sequence Information
- Coding Sequence
- ATGGATTATCCAGAATCACCCATTCCCTCTCAATCCCCCCATCCGAGATTATGCGCTTTCTGCCAACGTCAGAAGAATCTTCAAGCTCCCCGTCGGCAGATACCCTTCGTTGACCCTGcgtcggagaaaaaaataaacatcaaccCCTCCCCAAGCTCCCTCGCGAGAGTTGGGAAAGCCCTTCCTCCCGACTCGCGCCCCTTAAATCTTCATAGCGATACTTGGGCCACGAGTGTATgcccctccgtccccctcccacatctcctccaccctcttccccatCAAAACTTGCCCCGATCCGCccgcctctcccacccccatcctccttccctgcTACTCCTTCGGAAtctcacccctctctccccgtccATTTTGAATCTCCCTTCACGTTCCCCTACCCCCACCCGCTCCAAGCCTTCCCAAGTGCGGGGAGCCAGGCCCCATCTTTTTGAATCTCCGTGTATATCCACCCGCTTATCCCGCGAAGTTATCTCGGGTgcgaggtggaggggagggaggggtggcgtAGCGGGGGGAGGGGCAGAAAAACAAATCTACTTCGATTCCCATCTCCAGACGACTCAAGAACTACCCTCGCTCCCCCCGACCCCGTTTCTCTTCCTCCACTTCGCAGTCGTCAACCTCCTGGACCCCCCTCCTCTCACCCAACGCTCTCCTTCCGACCCCCATCGCCGAACATTTTCGTTCCCATCTCAAACATCAGGTGGAATGGGGGAAGGATATTTCACTCTCACTATCTCCTCTTCGTCCTCATCTTGGTCCGACTTCAACTCGCCCACCCTCCGCCCCTCCTCGCCACACACCTCTCTTCACCCTACCCATCACCCCGCCTTAATTCCCCGGTTCCCACCCAGTCCCCACCGCTTAAACCCCCGGAGTGCGGTCCTCGCTTCTGTGTCTCCCTACCTCTCAAACGCTCTGAATATGCCACCCCCTGTCTCCTCGAAAGCCACTCTTCTCTCATTTTATCTCCGACTTCCCCCACTTAGCCCTCTTGCTCCCCATTATCTCGCCCTTAACTCTCTCGTTCCCGGCTCCCGAACCCCATCGTCCCACACCCCGGCTGCACCGGCATCCCACCGGCCCCTTCCTTCATTTGAATCGCGAGACAAAGGAAGACTGCGATTTCAGATAGATTTCCGTCGCTCTATTTTTGTGGGCGCCAGACGTCTCGGGGGCTCTAAGCGCCGGGCGCGGTGTGGTGGATATATATCAGCggcggtggggagggggcgaagcTATGGGGTTGGGGGCGGGGCGAGTGAGCGAgcgagcACTCCTGAGGAGTCATTGCATTTCTTTTCGCATCCCCGCTCTTTTGAGACGGCCGCgttcctttctctcctccgctTTTCCACCTGGCTGATTCGTGCGTTGAAGTCTCCCACTGCTCCGCCCGAACGAATTCTCTCCCCTCTCGCAGGTGAAGAGGAAGACTCTTGGGTGGACTCGGAGGGTGTCCAGGAGGTGGCGCCGGCGGCGTCGTCAGAGGAGAAGGACGCCGCCGCCCAAGCGATGTCGTCTTCCCATCCAACGGAGAGGGACGGCGGGGGAGGGGTCACCGGGAGGCCGTCGCCCACCCGGCGGGGGGGCGAGGAGAAACGGAGGAGGACGTCGCTcaaggcagaggaggaggagggcggcgagGAGGGTGGGAACGAGGGACCTGGGGGCGAGGGACCAGAGGACGAAGGGGTGCCCGAAGGAAGGCCCAGGGCGACGGGGGCGGAAGACGACGAGGAAGCTGGCGGTGGGGAGTCACCGAGAAGGGCCCGCCGGAGGAGTTTGAGGAACAAGGCGGCGTCGGTCAAGGAGGAGGTGGAgtcggagagggaagaggagttGGTGGCcgccgaggaggaggagaaggcgacGGAGGGATTTGGGCGGGGGAcgaaggtggaggaagaggaggagtgtCGGAGGAGGGCGGCGCAGTCGAGGAGGAGGGAAGCgtcggaaggggaggaggaggaagccaTCGTGGTGAAGGacgaagatgaggaggaggaggcgtcgACGCCGGGAGGTGGCGTCGTTCCAGCCGCCATCACTGGTGAGTCCCCGGTCCCCTTTCCCTGCCCCTCCCCCAACCGTATCGCTTTTATTTCGCCCTTTTTTATCATCGCCGTCGTCGACTCACGCCTAAGTGATAATCGGACGGGACAAGTTTGCCCcccgggagagagaggagggggaTTCGAGATTCTTTCCTTCGGGAGCCCATTCCGGGCTCTCCTCCCTGAGGATCTAacccttccatctcctcctctaGGTGTGTCGGAGGGCGGTGTCGCCTCCCGGGGTTCTCCGAGCAGCGGTCCGGCCATGGGCTCGCCCCCTGCCCACCCCCCGCGCCTCAGACTCAACCCCAGCCTGGCCACAGATCCCGCCAGCAGGGGACCGCTGCCCCTCACCACGCATATCCCGCTCTCGGAGTTTGAGTACATGCTGCCACCGGGACTTCAGGCGTCGACCGCGGCCGCCGCAGCAGCAGCCGCGTTCGCCGCCGCCAGCCGCATCATCTGCTTCCCGCCGCCCCCGCACCCGGCCACTCCCCGGGCGCCGCCCACTACACCCCCGCACGCCATCCCAGCGACCCTCGCCGACTCCTCGCCGGCCGCTATGGCCTCGAGGGCCAGCAACTTGAAACCCGAAGCCATGGAAGTCAGGCAAGCCGCGCTTATGCTCAGACTCTGGCGGAAATTCCGACCTTCGCGAGAGAGTGTTTCGCGTCAAGGACTCTCCGGAGTCCACCGCATCTCACGCCCTCGTCCCTTTGCAGTGCCCGTGTACGTCTGCGCGCCGTGCGGCATCAAGTTCAGCAGCGCGAGCACTCTGGAGGCCCACCAGACGTACTACTGCTCCCACCGCAACAGCGTGCTGGGCGGCGCAGTGGCGACCCCGGCGGCGGCCTCCGCGgcggggggagggacgggggccGCCACCGCGATCCCCGGGCTGTCCCCCGCGGGGGCGGCGCCCGCGTCCGCCGCCGGCACCCCTGGCCCCCCCACCACCCCGTCCTCCTCGTCCcgcctcccgccctcctccccgtcATCCTCCACCTCGTCGTCCTCCTCGCACGCAACAATGGCGCAGGCGGACGCCCAGCAGATAAGATCCGTGGCAACGCCCTCCGGACCCATCAGGGtGAAGGGAGGCGAGGAGGAGAGAAACAAAAGAGGACTTCCTCGGCGTTCCTTTCCCGCTCGCCCCCGCCGCGTGGCTTGGCGTAGCGTGGATGGGGCGGTGGCGCTTCAGGGTCGTGGCGGAGGAAGCGAGTCTGAGGATGGTCGTCCCTACTCCGCGGAGATGGGTGGCCCCGAAGACCGCCGATCCCCATCCTCCATCCCCGAAGACGGCTGCCCACCCACCAAAGTCCAGAGGACCAGCCGGCCTTTCTCCTGCCCCCACTGCTCCTACTCCGCGGACAAGAAGGTCAGCCTGAACCGCCATATGAGGATGCACGGGGGGGTCATAACTGtgtcctcgtcctcctcctcctcgccatcGCCCTCCTCCACCacacccccacccctccacccacctcctccctcctctgcACCCTCCGCTCAGCCCCCGATACCCAACGGGGGCGTCTCCACCCAGCTCCACCACCTTCTCCAGCAGGGGATAGTGGTGGTGCCTGGCGGGGGAAGTGGCGGACCCCGAGGGCCCGACACGCCCCCTGCCTCGTCCTCCTCTCCCACCGACCCGTCtctgcccccgccgcccccgcccctcGCCATGGACCGCTACTGCCAAGACTGCGACATCCGCTTCTCGTCTATTAAGACGTATCGGGCGCACAAGCAGCACTACTGCAGCACGAGACATGCCGGGGGCAAGCCCCAGGCGTCCCCCGGGGGGAGCGGGGCCGACGGCGCGACCCCACCGGCCATGGTCCCACCTGCGGCCTCCACCCCGGAGGAGAGGAGACTGTCCGGGGACGTTGGCGACCTCCGGAGTCCCGGGATACCAGGTTCGGCAGCCCCCGCGCCTTCGGGCCCCTCGCCATCCAGTCACCTCCCGCAAGTCAAGCAGCACCTCCTGCAGCCACCGTTCGTGGCTCTGCCTACCAGTCCCGTCCTCCTGGTCCCGTACGCATTCCTACAAAGCGCTAGTCTCGTCGTGGCTGGGACGCCGACACCCAAGGGTGCTTGCATCCTCTTACCCGACGGCTCCCTGAGGCCAATGTCGCCGCCGCCACCGCTTCCCGGGTCCATGGTGACTCCTGCGCCGTCTCCAGCGAAGCGACGGACACCACCGGCACCCGACCCTGTGCCCACTCAGGCCCCAGTCACTCCGCAGCCGGTCACGCCGAAGCCAAAGGAGGAGAATTCTCAGGCCGCAAAGCCGCCACCCGGCTCCAGCCCGGCACCACTTGATCTTAGCTTCCGCCGCGACTCCAGTGAATCTCAGCCGTCAAGGACGGGCTCAGCGGCGTCAGCGCACAGTCAGCCTGCGAGGAGGTCATACCTCAAGCAGTCACCCCGGGAAGCGGAGGGTGTTGCGTCCTGGGAGGAGATGATGGCGGCTCAGGGAAGGAGGTCGTCGGAGTCGAAAGGCGGGCCGCACTCCCCGCCGTCCCTCCAGCCCGCGAcgccccaccccaccacccctgTGGACCACGCCCACTCGCCCGCCTCCTCCACGTCGTCGTCGGccgcctcctcctcacccccgtcTCCGGCCACGGGGACCGGAGGCCCCAAGGCGCGACCCTCCCGCCCTAACGGCATGTCCTCCTCCAAGGGACCCCAGGCCCCGCAGGCCCCGCCGCACCCCATGTTTCCGGCTACTCCGCCGCCGACACTCCCGCCGCACATCCAGCAGCAGATCCAACAGCTGCAGCAGTTCGGGAGCGCCGCCGGCATGGAAGGCCTCGGGATGGCCAACTTCCTGCTGGCGGCGTGCGCAGCCGCGGCTGCCGCAACGGCCGGCGGTGATGGAATGGCGAAGGCTGCGGCAGCGGCCAGCGCTGCGGCTCAGGGAGgtcttcctttcctcctcacaCCGGAGCTCGCCCTCCGAGTGTTCATGAGCAGCGCCGGCCTCCCGGAAGGGTTGATGCCGAGGGCACCCCCGCACCTCCCACCTCCCCAGCCCCCCATCCCGCCCCCCCAGCAggcccctccacctccccccaacGCAACCCCCCAGGTCCTCGTCAAGCAGGGAGTCTCCAAGTGCATAGAATGCAACATAGTATTCTGTCGGCACGAGAACTACCTCGCCCACAAGAGACACTACTGCGCCGCTCGGTTGGTGGAGGGGAGCGAGGATGGGTCCCCCGCGTCCGCCCCAGGGGGTCCCGGCGGCGCGTCGGGAGCTCCGGGCGCCCCGGGAGCTGAGGCGTCGGAGCACTCGACGCCTGAGCCCTCGTCGTCGGCGTCTCCGAGGGCGATGCCCTCGTCGCCGTCGCTCCCGCCGCAGCAGCCGCATGGCATcgccccgccgccccctcctccaaaGACCCTCCTGCAGTTCATCTGCGTGGCATGTGGCATCAAGTTCACGGCCTTCGACAACCTCCAGGCGCACCAGATGTACTACTGCCTCAAGAGGGATCAGAGGGTGGTTAGGAAATGCCCAAAATGCAAGATCTCGGTGACGGAGGAAGCCCTCCTCTCCGGCCGGCATCAGTGCCCGGCCACCAACGGCGGCTCCTCGTCCGCCTTCCCGCCCGGTGGCACCACCGGTGGCTGGAAGTGCCCCTGCTGCGACGTCCTCAGTCCGACGGCCAGCGCCGCCCAGAGGCACGTGGAGACCCATGCCGGTGGCGCCGTCCGGGCCTTCCGCTGCACGTACTGCGGCTACAGGGGTAACACCCTCAGAGGCATGCGCACCCACATACGCGCCCACTTCGAGCAGAGGAACCGCGAGGCCCCCATGACGCCTCACTCCCCCGAGCTGCAAGAGGAGAACTTTATCGCGTGCATCCTGGAGGACGACTCGGAGGTGCCGCCCATGGTGCCCGTCGGCATTGGGGTGCCACCCGTCCTCGCCGCGCCCAGGTCCGCCACGCCCGCCACCGACTCGGACGACGGCCGAATGGACCCAGGGGCCGTCGGTGGAGAGAGAATGCACTATTGCGAGGTGTGCGGCTACTCGTCCACGTACAAGGGTAACGTGGTGCGGCACCTCAAGCTGGTGCACAAGTGCACACACCCCGGCGGTCCCACGGAGACAGGAGTCATGGGTCCCGGGGTGGCTATGGTGAAGAGCGAAGGCGGCGGAAACACCTCGTCGTCCTCCGCGcactccctccactcccccgccGGGACTCCGTCGCCCACCGGTGACGTGATGGTGAACGGGTACGGGAGCGGTGGAGGAGGTGGCGGAGGTCACCGGACAGAGGACGACGACGAGGACATGGAGGTGAGGGCGGAGTCCTTGGTCAAGGTGGAGATCACGGAGGTGGAGGACGAGGAGGCGGTGGAAGGTGGGTTCGGAAAGCGCAAGCCCAAGACTGAGGGCGGTagcgaggcggaggaggagagaagggccGAAGACGGTAACTCGAGGGACTCGTACGGCGGTCACGGGGGCAGGAGCCCTCCCGCGAGGGTCATCAAGAGGGAGGTCCTGTCCTCGGGCGAGGAAGGCAGTTCCGGCGGAGGTCGGTGCTCGTCCAAGACCCCGTCTGTCGAGGGGGACGTGAAGAAGGAAGCCGAGGATCTGACGGTGTCGAGGGgggaagatgaagaggaggaggacaaAGTGAAAGTGGATGATGGGGAGGTGAGAGCGGCGGGAGATGAGGGGGCGGAGTCGGACGGGTCAATGGCCGCCAGTAACTCCAACAGCTACTCCCACGCCTCGACGCAGCAGGCCATCCGGAAAACGGACCCCAAGTACTGCAGATCCTGCGACATCACCTTTAACTACCTGCCCACGTTCATAGCCCACAAGAAGTTCTACTGCTCGAGTCACCACCCGCCGGCGCAGAGGGGTGGGGGTTCGCCAGGGGCGTCCATCGCGAGGGCCAGGAGCGTGGAGGCCGCGGGGCACGGGGCGTCGGGGAACGGCAGAGCGGAGGCGGCGACCCCCGTGCAGTGA
- Protein Sequence
- MDYPESPIPSQSPHPRLCAFCQRQKNLQAPRRQIPFVDPASEKKININPSPSSLARVGKALPPDSRPLNLHSDTWATSVCPSVPLPHLLHPLPHQNLPRSARLSHPHPPSLLLLRNLTPLSPSILNLPSRSPTPTRSKPSQVRGARPHLFESPCISTRLSREVISGARWRGGRGGVAGGGAEKQIYFDSHLQTTQELPSLPPTPFLFLHFAVVNLLDPPPLTQRSPSDPHRRTFSFPSQTSGGMGEGYFTLTISSSSSSWSDFNSPTLRPSSPHTSLHPTHHPALIPRFPPSPHRLNPRSAVLASVSPYLSNALNMPPPVSSKATLLSFYLRLPPLSPLAPHYLALNSLVPGSRTPSSHTPAAPASHRPLPSFESRDKGRLRFQIDFRRSIFVGARRLGGSKRRARCGGYISAAVGRGRSYGVGGGASERASTPEESLHFFSHPRSFETAAFLSLLRFSTWLIRALKSPTAPPERILSPLAGEEEDSWVDSEGVQEVAPAASSEEKDAAAQAMSSSHPTERDGGGGVTGRPSPTRRGGEEKRRRTSLKAEEEEGGEEGGNEGPGGEGPEDEGVPEGRPRATGAEDDEEAGGGESPRRARRRSLRNKAASVKEEVESEREEELVAAEEEEKATEGFGRGTKVEEEEECRRRAAQSRRREASEGEEEEAIVVKDEDEEEEASTPGGGVVPAAITGESPVPFPCPSPNRIAFISPFFIIAVVDSRLSDNRTGQVCPPGERGGGFEILSFGSPFRALLPEDLTLPSPPLGVSEGGVASRGSPSSGPAMGSPPAHPPRLRLNPSLATDPASRGPLPLTTHIPLSEFEYMLPPGLQASTAAAAAAAAFAAASRIICFPPPPHPATPRAPPTTPPHAIPATLADSSPAAMASRASNLKPEAMEVRQAALMLRLWRKFRPSRESVSRQGLSGVHRISRPRPFAVPVYVCAPCGIKFSSASTLEAHQTYYCSHRNSVLGGAVATPAAASAAGGGTGAATAIPGLSPAGAAPASAAGTPGPPTTPSSSSRLPPSSPSSSTSSSSSHATMAQADAQQIRSVATPSGPIRVKGGEEERNKRGLPRRSFPARPRRVAWRSVDGAVALQGRGGGSESEDGRPYSAEMGGPEDRRSPSSIPEDGCPPTKVQRTSRPFSCPHCSYSADKKVSLNRHMRMHGGVITVSSSSSSSPSPSSTTPPPLHPPPPSSAPSAQPPIPNGGVSTQLHHLLQQGIVVVPGGGSGGPRGPDTPPASSSSPTDPSLPPPPPPLAMDRYCQDCDIRFSSIKTYRAHKQHYCSTRHAGGKPQASPGGSGADGATPPAMVPPAASTPEERRLSGDVGDLRSPGIPGSAAPAPSGPSPSSHLPQVKQHLLQPPFVALPTSPVLLVPYAFLQSASLVVAGTPTPKGACILLPDGSLRPMSPPPPLPGSMVTPAPSPAKRRTPPAPDPVPTQAPVTPQPVTPKPKEENSQAAKPPPGSSPAPLDLSFRRDSSESQPSRTGSAASAHSQPARRSYLKQSPREAEGVASWEEMMAAQGRRSSESKGGPHSPPSLQPATPHPTTPVDHAHSPASSTSSSAASSSPPSPATGTGGPKARPSRPNGMSSSKGPQAPQAPPHPMFPATPPPTLPPHIQQQIQQLQQFGSAAGMEGLGMANFLLAACAAAAAATAGGDGMAKAAAAASAAAQGGLPFLLTPELALRVFMSSAGLPEGLMPRAPPHLPPPQPPIPPPQQAPPPPPNATPQVLVKQGVSKCIECNIVFCRHENYLAHKRHYCAARLVEGSEDGSPASAPGGPGGASGAPGAPGAEASEHSTPEPSSSASPRAMPSSPSLPPQQPHGIAPPPPPPKTLLQFICVACGIKFTAFDNLQAHQMYYCLKRDQRVVRKCPKCKISVTEEALLSGRHQCPATNGGSSSAFPPGGTTGGWKCPCCDVLSPTASAAQRHVETHAGGAVRAFRCTYCGYRGNTLRGMRTHIRAHFEQRNREAPMTPHSPELQEENFIACILEDDSEVPPMVPVGIGVPPVLAAPRSATPATDSDDGRMDPGAVGGERMHYCEVCGYSSTYKGNVVRHLKLVHKCTHPGGPTETGVMGPGVAMVKSEGGGNTSSSSAHSLHSPAGTPSPTGDVMVNGYGSGGGGGGGHRTEDDDEDMEVRAESLVKVEITEVEDEEAVEGGFGKRKPKTEGGSEAEEERRAEDGNSRDSYGGHGGRSPPARVIKREVLSSGEEGSSGGGRCSSKTPSVEGDVKKEAEDLTVSRGEDEEEEDKVKVDDGEVRAAGDEGAESDGSMAASNSNSYSHASTQQAIRKTDPKYCRSCDITFNYLPTFIAHKKFYCSSHHPPAQRGGGSPGASIARARSVEAAGHGASGNGRAEAATPVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -