Htit101499.1
Basic Information
- Insect
- Hetaerina titia
- Gene Symbol
- -
- Assembly
- GCA_037158775.1
- Location
- CM073777.1:23095632-23108860[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.6e-05 0.014 18.5 1.1 1 23 20 42 20 42 0.98 2 10 4.6e-06 0.0038 20.2 2.6 1 23 48 70 48 70 0.99 3 10 1.2 9.9e+02 3.2 6.1 1 23 77 99 77 99 0.95 4 10 2.5e-07 0.00021 24.2 0.0 1 23 105 127 105 127 0.97 5 10 2.1e-06 0.0017 21.3 0.2 1 23 133 155 133 155 0.99 6 10 1.8e-07 0.00015 24.6 0.6 1 23 161 184 161 184 0.96 7 10 2.9e-05 0.024 17.7 0.4 1 23 190 213 190 213 0.95 8 10 7.3e-07 0.00061 22.7 0.9 1 23 219 241 219 241 0.99 9 10 4e-05 0.034 17.2 0.3 1 23 247 269 247 269 0.96 10 10 0.00025 0.21 14.7 0.1 1 23 275 299 275 299 0.92
Sequence Information
- Coding Sequence
- ATGGGCAGCGTGAAGGCCCTGCGTGAGCACAAGCGGGAGGCACATGGAAAAGCCAAGCACAAGTGCGACGTGTGTGGGAAGTTCTATGGATCACGCAACCTGCTCTCGGAGCACATGAATGTGCACAATGGTGTTCGCCCCTACAAGTGTGAGCTCTGTGAGAAGACATTCGCATCAAGGTACTGCCTCAAAGTGCACGTGAAGATCCATGACGCAAGACCTCGGCCTCACATGTGCCAAGCGTGTGGGAAGACCTTCCTCTGCCTGCAACACCTTCAGCAGCATGCAAGAACTCACTCAGACAACAAAGACTTTGTTTGTGAAACCTGCGGAAAGGCATTTGCCACGGCACGTAACTTAGAGGTTCACATGGTGGTGCACTCTGGGGCCAAACCATACACATGCAGCGTGTGCCAAAAGGGATTTGCTCGCCGCGCAGAGTTGGTCGACCATGAACGCACACACACGGGGGAGAAGCCATTCCAGTGCGAGACGTGTGGTGCGACATTCAGTCAGCGCAGCAACCTCATTTCACACCGGCGTGCCACACATCTTGATGACAGACGCTTTGTTTGTGATGAGTGTGGGCGGGGATTTAAGCGTCGGAGACTTCTCGACTACCACCGTAAGGCAGCCCATACAGGAGAGCGCCCATACACGTGTGGGACTTGTGGTGCTTCCTTTGTGTACCCTGAGCACTACAAGAAACACATCCGGGTGCACACAGGCGAGCGCCCTTATGCCTGTGAAGTGTGTGGGAAGCGATTTGGCTCCCGTGACAACCGAAATGCCCACCGCTTTGTGCACAGCGACAAGAAGCCTTATGAGTGTGTTGTTTGTGGCATGGGATTCATGCGCAAACCTCTGCTGTACACACACATGCAGTCACAGGGGCACCTCCAGGATGCCATTGTCATCAACCAGCCACGCATCACAAGTGTGTACGAGGAGCGTGGGCAAACAACACCAGAGCAGCATGTATCCCCAGAGCCAGGTCAGTACCAGTCGGCTGGGGGTGCCATAGGAGGAGGGACTCTCAATGGTACAGCGCTGTACGTGACAGAGCGTCAACAAATGCTACCATCTGGTGGCTCAGCTCTCAATGGCAGTGGCACATCATGCCCAGGTGCTGTGGTGTTGGAGGGTGTCGAGGTGGTCGATGCGGAGGGCAGTGGGGATGAACAACGAGAGACACGTGTGGTGAAGCACGTGGCATGGGAGATGAgtgagaggaggggtggaggccACAAGGGAGGGAGCGCCAGTTCCACGACCACGATGACAATCCCCTTGGACGAgggtgctgatgaccaaggtGACATCACCAAGGAAATCGATGATGATGGGCGCCATGTGTACACCATCTCAGCCAAGGAGCACATTATCCTTCGGCAGGCAGCAGACAGTGCAGCACAGCGGCTGCGAGACCACCAAGGAGAGATTCATGGCACTGGAGATGAGGTGAATACCATCGCATACATGGCTTCCTGCAATTGCCACCCCCTTTCCCATCACCCACCCTGCCCTTAG
- Protein Sequence
- MGSVKALREHKREAHGKAKHKCDVCGKFYGSRNLLSEHMNVHNGVRPYKCELCEKTFASRYCLKVHVKIHDARPRPHMCQACGKTFLCLQHLQQHARTHSDNKDFVCETCGKAFATARNLEVHMVVHSGAKPYTCSVCQKGFARRAELVDHERTHTGEKPFQCETCGATFSQRSNLISHRRATHLDDRRFVCDECGRGFKRRRLLDYHRKAAHTGERPYTCGTCGASFVYPEHYKKHIRVHTGERPYACEVCGKRFGSRDNRNAHRFVHSDKKPYECVVCGMGFMRKPLLYTHMQSQGHLQDAIVINQPRITSVYEERGQTTPEQHVSPEPGQYQSAGGAIGGGTLNGTALYVTERQQMLPSGGSALNGSGTSCPGAVVLEGVEVVDAEGSGDEQRETRVVKHVAWEMSERRGGGHKGGSASSTTTMTIPLDEGADDQGDITKEIDDDGRHVYTISAKEHIILRQAADSAAQRLRDHQGEIHGTGDEVNTIAYMASCNCHPLSHHPPCP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00307096;
- 90% Identity
- -
- 80% Identity
- -