Htit121358.1
Basic Information
- Insect
- Hetaerina titia
- Gene Symbol
- -
- Assembly
- GCA_037158775.1
- Location
- JAVFHJ010000014.1:3364584-3366509[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.2e-06 0.0027 20.7 0.1 1 23 141 163 141 163 0.98 2 13 0.0015 1.2 12.3 1.8 1 23 169 191 169 191 0.97 3 13 8e-07 0.00067 22.6 0.5 1 23 327 349 327 349 0.98 4 13 0.00028 0.23 14.6 3.0 1 23 354 376 354 376 0.97 5 13 3.9e-06 0.0032 20.4 1.8 1 23 383 405 383 405 0.99 6 13 4.6e-07 0.00039 23.3 0.6 1 23 411 433 411 433 0.98 7 13 1.6e-05 0.013 18.5 1.7 1 23 439 461 439 461 0.98 8 13 0.00078 0.66 13.2 9.1 1 23 467 489 467 489 0.98 9 13 5.1e-08 4.3e-05 26.4 2.4 1 23 495 517 495 517 0.98 10 13 0.00041 0.35 14.1 2.3 1 23 523 545 523 545 0.97 11 13 9.5e-06 0.008 19.2 1.6 2 23 552 573 551 573 0.96 12 13 4.9e-05 0.041 17.0 0.1 1 20 580 599 580 601 0.94 13 13 0.00048 0.4 13.9 3.9 1 23 607 630 607 630 0.94
Sequence Information
- Coding Sequence
- ATGGTAGATGTGGGTAACACAGTAAAACTGAATCCTCTCTCTCAATTATTTGCAGGACACCAAACGTCGAGTATCAACACGGATCCGATTGGATTATCCTCACCGTACCCTTGTGGTGAATTAAAGTCGGAACCCCTGAGGACCTCTCCAACATCAATTGCCTCAGTTAAACAGGTGGATTCAGTCAACGAACCCTTGGATGAAATTAATGAGCGTCACGATGTTTTAGTTGGTCACAGTGTCGCTGGACGTTCCCCTGTCATCAATGATCGCAATGGACGTTTGAGTCGTCATCAGCAGAGGGTTCCCGTGCCTCCAGGGGAACAGATATCCACGGTCGACAGGGACGGCATTGTTTCAGAGACGGTACCCAGTTTGAGCAGACAAAGTTTAACGGTCGATCTGTTAAAAGGACAGGCGTTCCAGTGTGCCGTGTGTGGGTACGTTTTCGCCTCGAAGGGATTGGTCGAGAATCACATGAAAGTTCACATCGACAGTCAATTTTTTCACTGCGAGACGTGCTTCATTGGGTTCAGCAAGAGGTCGGAATATGACGCCCACATGCTGAGCCATCGTCCGACCATTTCGGAGAACGGGGAGAGGGAGGTCGAACGTGAGGTTGTGTCGGGAAACGGGAATGTGAACTTGGAGGAGAAGTCTGCTCGGGGTGTGGTGCCTTCTGGGGTGTCGAGGGAGGCTCCTCCTTCTGTTGTCGACAACGCTACAGAGGGTAAAATGTCCTCGGGGGTGCAGAATCGGAGTGATTTGAGTGCGATGGGGAATCATAGTGTTGGAGGGGCTGGCTCGAGTACGGTATTGCTTCTGGGCAATTGTGGAGTCACGACTGTTATAATCCCGCCGATTTCGGGAGGAAAGAGCGGTCAGGTCAGTGGGGGGCATTGTGGTTCCGTTCAGCAGCCACGTGGAATCCCGATAAGACCGCTAACGAAAGCCAAAGTCGTTAAAGATGACCAGAGTTTCGTCTGTGATGTCTGTGGAAGGTGTTATGGAAGGAACATCCAATTGAGGGCGCACATGCGCGCCCATCGTCCCAAATCGTACGCTTGCAAGTCTTGTCCGAAGACTTTCCCGGACAGACTGAGCTTCAATCGTCACAGGCACATGCATTTGGTCGAGGAAAAACCCTTCAAGTGTTCCGTGTGTTCCAAGGGATTCCCGCACAAGCAAGCCCTCAACCTACACATGTCCACGCACACTGGGGCCAAGCCGTTCGTTTGCAAGGTTTGCTCGAAGGCGTTCAGTCAGGGGAGCAATCTTCGGACCCACATGACGGTTCACTCAGACGAAAGGCCTCACGTTTGCGATATCTGTTCCAAGGGATTCAGCCTCAAGCAATCCCTCATGATCCACAGACGAACTCACACGGGAGAGAGACCATATTGCTGTAAGCTCTGTTCCCGTTCCTTCTCCCGCAGCTGTCACCTGAGCATGCACATGGCCCGACACAGGGGAGAAAAGCATCACAAGTGCGCCCACTGCGACAAGGCATTCATCGACAAGGGCGACCTCACCAAACACATGCGGGTCCACACTAAAGAACGTCCCTATCGCTGCAAATACTGCCCGAACGTCTATTCCCACGTGACTATGCTCAATCGCCACACGTTGCTCCACACGGGTGAGACGAGGCTGTCGTGCGGCGTCTGCTCGAAGAAGTTCACGTCGAAGTCGACGTACACCGCCCACATGTACAAGCACACCGTCGGGGGGGAGTCTTTCAAGTGCGACGTCTGTTCCAAGGGGTTCCCCACGAAACAGGAGCTCAGCGCGCACATCGTGACGAACGGTAGGGAATATTTCAAGTGCTATCACTGTTCGTACGCAACGCATCGCAAATCCAACCTGAGGAATCACATAGAGGGCGCGCATGGGGAAGACGACGACTTGGGTGCGCAGGACGCTTGA
- Protein Sequence
- MVDVGNTVKLNPLSQLFAGHQTSSINTDPIGLSSPYPCGELKSEPLRTSPTSIASVKQVDSVNEPLDEINERHDVLVGHSVAGRSPVINDRNGRLSRHQQRVPVPPGEQISTVDRDGIVSETVPSLSRQSLTVDLLKGQAFQCAVCGYVFASKGLVENHMKVHIDSQFFHCETCFIGFSKRSEYDAHMLSHRPTISENGEREVEREVVSGNGNVNLEEKSARGVVPSGVSREAPPSVVDNATEGKMSSGVQNRSDLSAMGNHSVGGAGSSTVLLLGNCGVTTVIIPPISGGKSGQVSGGHCGSVQQPRGIPIRPLTKAKVVKDDQSFVCDVCGRCYGRNIQLRAHMRAHRPKSYACKSCPKTFPDRLSFNRHRHMHLVEEKPFKCSVCSKGFPHKQALNLHMSTHTGAKPFVCKVCSKAFSQGSNLRTHMTVHSDERPHVCDICSKGFSLKQSLMIHRRTHTGERPYCCKLCSRSFSRSCHLSMHMARHRGEKHHKCAHCDKAFIDKGDLTKHMRVHTKERPYRCKYCPNVYSHVTMLNRHTLLHTGETRLSCGVCSKKFTSKSTYTAHMYKHTVGGESFKCDVCSKGFPTKQELSAHIVTNGREYFKCYHCSYATHRKSNLRNHIEGAHGEDDDLGAQDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -