Htit121329.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hetaerina titia
Gene Symbol
-
Assembly
GCA_037158775.1
Location
JAVFHJ010000014.1:2801539-2831340[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 6.4e-05 0.054 16.6 0.4 1 23 129 151 129 151 0.98
2 16 0.0034 2.9 11.2 5.4 1 23 157 179 157 179 0.99
3 16 6.1e-05 0.051 16.7 3.9 1 23 185 207 185 207 0.97
4 16 0.00011 0.091 15.9 1.1 3 23 215 235 213 235 0.98
5 16 5.8e-08 4.9e-05 26.2 2.2 1 23 241 263 241 263 0.97
6 16 0.011 8.8 9.6 7.1 1 23 269 291 269 291 0.98
7 16 5e-06 0.0042 20.1 1.6 1 23 297 319 297 319 0.98
8 16 0.043 36 7.7 0.1 5 22 614 631 613 631 0.92
9 16 6.4e-05 0.054 16.6 0.4 1 23 662 684 662 684 0.98
10 16 0.0034 2.9 11.2 5.4 1 23 690 712 690 712 0.99
11 16 9.3e-05 0.078 16.1 3.5 1 23 718 740 718 740 0.97
12 16 0.00011 0.094 15.8 1.2 3 23 748 768 746 768 0.98
13 16 6e-09 5e-06 29.3 1.7 1 23 774 796 774 796 0.98
14 16 0.00026 0.21 14.7 5.7 1 23 802 824 802 824 0.99
15 16 0.00042 0.36 14.0 1.6 1 23 830 852 830 852 0.96
16 16 0.00059 0.49 13.6 6.3 1 23 858 880 858 880 0.97

Sequence Information

Coding Sequence
ATGGATCTCCGAGATGCCACGATTGCTGTCAAAGAGGAGGTTGACACTGCCAGCGGGTGCTCTGATTCTACGGGAAGGGACGTTGATTCGTCAATGGTGGTCAACGCATCAGTGCAGGAAGGTTGCAGTCATTGGTCTGACAATGGAGCAGGTGGGAATATGGATTGTTCCCAAGACGGACACTTGGCCTTCAATGAGGAAGTGGACATTAAGGAAGAATTCGACGAAGACATTCCTCAGGAGGAAGGAAGTCTGGGAGGAGAGGTGTCGGCAGGACAAGATCACGTGAGGCGTCTGCACCCTGCGCAGGCAAAGGACGTCGGAATTGGGGTTGTTGGCGAGGCTGTTGACAGGGCGAGTGATGCTAAAGCAGAGGCATTGAGGTACAAGTGTGCGGTTTGTTCGAGAGCGTTCCCATTGAAGTACAAACTCAAACGGCACGTCCTAATCCACACCGGAGAACGACCTTATCAGTGCGGTATATGCCTGAAGGGCTTCCACCACAAGCAACACCTTGAGGGTCACAGATTGACCCACACGGGGGAGCGCCCCCACAAGTGTGACGTTTGCGCAAAGGCCTTCACGCTCAAGCAACACCTCAGGAAGCACATGCTCCTGCACAGCGACGAGAGGTCGTTCGGATGTGAGATGTGCCCTCGGACATTCAGGCTGAAgcagcagctcaaggagcaccGGCTGACGCACAACGGGGAAAAGCGCCATAAGTGTCAGGTTTGCGGGAGGGCTTTCACGCAAAAGGCGAACCTTAAGAGGCACATGTCGTTGCATACGGGCGAGAGACCTCACAAATGCGGCATTTGTTTGCGCGGATTCCACCACAAGCAACACCTCGAGGGTCACATGCTGACCCATACGGGGGAGAGGCCCTACAAGTGTGAATTGTGCCCAAAGACGTTCACTTTCAAACAATCCCTCAAAGGGCATATGTACATTCACACGGGAGAGAAGCCATATCAGTGTCAGGAGGTGAGGGATGTCCCATGCCATGGTGTAAACGGTGCGGAGAGGCCAGAAGGGGATGCGGTTCATGGTACGTCAGGCAGAGTATGGGCGTTGGGTGGTCCTGCGGAATCTGTGGCTCATTCGGTCCGGACGGCACCGGTTGTGGTGGAAGACACTTATTTACTGAACGATCGGCTAAATTGGATGGCCGATAATAATTGCAATGAAGCGGAGATTCAGTGGCGTGGGGAGTTGAAGGAAGATATTGGTGACGACGCCATCGCCAGTGATGCCATTAACAGGAGGGGTGTGAATGTCCAAGATGACTTGATCGATGTCAAAGAGGAGGCTGACGTTGCCAACGGATGTTCTGTGGCTCCAGAAAAGGATGTAGAATCGTCAATGGTCGCGTCAATGCAGGACGGTGGCAGTCATTGGTCGAACAATGAAGAAGCAATGAATTTGTTGCCGGTTGGAATGAAGATGGAGTGTTGCGAGGAAACAATTGTCAGTGAGGCTGTCGACGGGAGGGCTGTGGATGTCCGAGTTGACACGATTGCTGTCAAAGAGGAGGTTGACACTGCCAGCGGGTGCTCTGATTCTCCGGGAAGGGACGTTGATTCGTCAATGGTCAACGCAACAGTGCAGGAAGGTTGCAGTCATTGGTCTGACAATGGAGCAGGTGGGAACATGAACTGTTCACAAGACGGACACTTGACCTTTAATGAGGAAGTGGACATTAAGGAAGAGTGCGATGAAGACATTACAGATGAGCAAGGACGCCTGGGAGGAGACGGGTCAGTAGGGCAAGGTGGTGGAGAAAGACGGGATGGCGCGGAGGGAGAATGCGTGGGGAAAGTTGCACACAAGGGTCAATTTTGCAACAGGGAATTTGCGCAACGAGATGACCTCAAGGGTCACGTGAGGCGTCTGCGTACTGAGAAGGCGAAGGACGTCGGAGATGGTGTTGTTGGCGAGGATTTCGACTGCGCAAGTGATGCTGAAGCAGAGGCATTGACCTATAAGTGTGCGGTTTGTTCGAGAGCGTTCCCGTTGAAGTACAAACTCAAACGGCACGTCCTAATCCACACCGGAGAACGACCTTATCAGTGCGGTATATGCCTGAAGGGCTTCCACCACAAGCAACACCTCGAGGGCCACAGATTGACCCACACGGGGGAGCGCCCCCACAAGTGTGGCGTTTGCGCAAAGGCCTTTACGCTCAAGCAACACCTCAGGAAGCACATGCTCCTGCACAGCGACGAGAGGTCGTTCGGATGTGACATGTGCCCTCGGACATTCAAGCTGAAgcagcagctcaaggagcaccGGTTGACGCACAACGGGGAAAAGCGCCACCAGTGCACGGTTTGCGGGAGGGCTTTCACGCAAAAGGCGAACCTGCAACGTCACATGCTAACCCATACCGGAGAAAGACCGTACCAATGCGGAATATGCCACAAACGCTTCCACCAGAAGCCGCATCTCGAAGGTCACACGTTGACCCACACCGCGGAAAGGCCCTTCAAGTGCGAACTGTGTCCGCAGACGTTCAATTTCAAAcaatccctcaaaggacacttGCTGTTCCATTCGGGGGAGAAGCCACACCGGTGTCAGCTCTGTCCCAAAGCCTACATGCACAAAAGACACCTGAAAGTGCACATGCTAAACCACAGAGATATACCCCAACAGCAAGACGACATCCCGAAGGACATTAACGCAAAGACGCAGCCTTGA
Protein Sequence
MDLRDATIAVKEEVDTASGCSDSTGRDVDSSMVVNASVQEGCSHWSDNGAGGNMDCSQDGHLAFNEEVDIKEEFDEDIPQEEGSLGGEVSAGQDHVRRLHPAQAKDVGIGVVGEAVDRASDAKAEALRYKCAVCSRAFPLKYKLKRHVLIHTGERPYQCGICLKGFHHKQHLEGHRLTHTGERPHKCDVCAKAFTLKQHLRKHMLLHSDERSFGCEMCPRTFRLKQQLKEHRLTHNGEKRHKCQVCGRAFTQKANLKRHMSLHTGERPHKCGICLRGFHHKQHLEGHMLTHTGERPYKCELCPKTFTFKQSLKGHMYIHTGEKPYQCQEVRDVPCHGVNGAERPEGDAVHGTSGRVWALGGPAESVAHSVRTAPVVVEDTYLLNDRLNWMADNNCNEAEIQWRGELKEDIGDDAIASDAINRRGVNVQDDLIDVKEEADVANGCSVAPEKDVESSMVASMQDGGSHWSNNEEAMNLLPVGMKMECCEETIVSEAVDGRAVDVRVDTIAVKEEVDTASGCSDSPGRDVDSSMVNATVQEGCSHWSDNGAGGNMNCSQDGHLTFNEEVDIKEECDEDITDEQGRLGGDGSVGQGGGERRDGAEGECVGKVAHKGQFCNREFAQRDDLKGHVRRLRTEKAKDVGDGVVGEDFDCASDAEAEALTYKCAVCSRAFPLKYKLKRHVLIHTGERPYQCGICLKGFHHKQHLEGHRLTHTGERPHKCGVCAKAFTLKQHLRKHMLLHSDERSFGCDMCPRTFKLKQQLKEHRLTHNGEKRHQCTVCGRAFTQKANLQRHMLTHTGERPYQCGICHKRFHQKPHLEGHTLTHTAERPFKCELCPQTFNFKQSLKGHLLFHSGEKPHRCQLCPKAYMHKRHLKVHMLNHRDIPQQQDDIPKDINAKTQP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-