Htit121108.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hetaerina titia
Gene Symbol
-
Assembly
GCA_037158775.1
Location
JAVFHJ010000013.1:3304980-3314981[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 7.9 6.6e+03 0.6 0.2 1 20 138 157 138 157 0.82
2 15 1.9e-05 0.016 18.2 3.2 1 23 283 305 283 305 0.99
3 15 1e-07 8.5e-05 25.4 1.4 1 23 311 333 311 333 0.98
4 15 2.6e-07 0.00022 24.1 0.8 1 23 339 361 339 361 0.98
5 15 3e-07 0.00025 24.0 0.9 1 23 367 389 367 389 0.99
6 15 6e-07 0.0005 23.0 2.2 2 23 396 417 395 417 0.97
7 15 1.2e-06 0.00098 22.1 2.4 1 23 423 445 423 445 0.98
8 15 1.3e-07 0.00011 25.1 1.4 1 23 451 473 451 473 0.98
9 15 4.7e-06 0.004 20.2 2.0 1 23 480 502 480 502 0.97
10 15 2.7e-05 0.023 17.8 6.5 1 23 648 670 648 670 0.98
11 15 4.5e-06 0.0038 20.2 1.1 1 23 676 698 676 698 0.98
12 15 0.00042 0.35 14.0 0.2 2 20 705 723 705 725 0.94
13 15 2.2e-05 0.019 18.0 0.8 1 23 812 834 812 834 0.98
14 15 7.3e-06 0.0061 19.6 3.6 1 23 840 862 840 862 0.96
15 15 8.6e-07 0.00072 22.5 0.8 1 23 868 890 868 890 0.98

Sequence Information

Coding Sequence
ATGCAGATTAAGGAGGAGGAGTATGAGGAGGGTGTTGAAccagagagaggggaagagtcCCCGAGCCAGAAGAGGCTGGAGGAGGATGAGGACTACTCTGCCGAAGACCACATTGGTACTCAAGCGGACTCGGAAACCGGAGACGATGGCATCAAAAGCGAGACGCTGGAAGATGATGCTGATGGATTGTCGGGATCTCAGGAAATCATTCCCGTCGGCGACATGGTCGAGGTGAAAGTTGAAGAGGTCCAAGTTGATGACGACCTCTGTGATGCAATTGGCGAGGATGATGTCGAATCAATCCTCCCCGACAATGGTAGGGTCGACTCCTCTCCATGCCGCAACAGGCTCACCGTTTGCGATGGTTCCATCAGCTACAAGAGCTCCGCAATGGTTGGCGGACGGGAAGAGTTCATGTGTGCCGTCTGCGAGGAGATATTCCTGGACCTCGATAGCCTCCGTTGTCACATGCCGTGCAGTGTGAGGACCTCAGGACCTGTGCCGACCGGCATTGTGGGTAATTTGGGCGGAAGGGCGATGGATTGGGAACGCGAATTGGGGGAGAGTTATGGCACGGGTCGGATGAAAGAGGAGTGTGACGTTGGGGTTGTGTCGGGTGACCCTTTGGGTGTTGATGCTGCTAGTGGGACGATTGGGGATGGATCGCGTTATGTCCCGAGGGGTTATTCTGGCAACTTGTCCAGGGGAGCGCACGGGAGCAAGTCGGGGAACGTTGCTATGAACAGGAAGGGGCCACGTGCGCGGAATATGAGAGCTACTGCCAGGGGCATTGGTAGACCTCGTCCGGTCATCTCTGCCAGTGTCGTCACTGACAAAACCATCTCGTACCAGTGTGATATGTGCCGGCATGGCTTCTCCAGACTGGATAAGCTCAAGAAACACATACAGTCGCACTCGGAAGAGGGTGGCTACGCATGTCCCACTTGCGGCAAGAGTTTCCGTACGCGATGGAGCCTTAAGAACCATCGGAAGTCCCACTTCAGAGTGACGCAATACGAGTGCCCAATTTGCAGCCGTAAGTTCTCCAGACCCCAACACCTGGAGGCCCACAGGGCGACTCACGGTACAGGCACAGAGTACCAGTGTGGCATATGCCGCAAGACCTTCCCCCAGAGCAGCTACCTTGAGATGCATCTCAAAACGCACGAGGGAGACGAATCGACCCAGTGCCACATTTGCGGCAAGCGGTTCAGTCGGAAGAACGTGCTGACGGTCCACCTCAGAGTCCACATGGGAATTAAACCGTACGAATGTCAGGTGTGCCACAAACGGTTCTCCCAGAAGGTCAACCTTAAGACCCACGCCGCAACTCATGAGGGAACACAGCCCTACTCCTGCGATCTGTGCCACAAGAGTTTTGCGGACAAGGCAGACTTGAACCGGCACGTCAGGATGCATTCCGGTACACCCAGGCCTTATCAGTGCCACCTCTGTGGGAAGACGTATGCCCAGAACAAGAGTCTGTTGACCCATCTGGAGAATCATCCGCCGTCTGTCGGTTTCAAGGCAAATCCTGACCTACCATCCCACTCCGGTATGGCCCTGGAGGTGAAACCGGAGGTCACAATGCCTGAGCCCTGTGTCACGCCAGACCTGAGCCATCTCCCGGTCAGTATAACTAGGGTCAAGCTTAATCCGGCATCGCAGAAAAATGATGGTAGTGGTAACCGCGGTCAGGTACGCATGAAGGCATCTCCGTCTCAGTCCGGTTTGGTTCCAGAACCGAGTTTCAGTATCAGTCCGGTAATTGGACCTGTGGTGCCCGCCAGAAACCGAATGGTAGACTTGGGTTCCCCCGACAGGGATGAGAAACCGGTGTTGAACCTCGGTTTGGATTTGACCTCGAAAGATTTCGAAGGAAATCACCACGAGGCGATCAGCATGATGGGTCACCCGGAGACCGGTCCGAAGGTCAGACCGTACAAGTGCCAGATATGCCACAAGTGCTTCGGGCACAAGGAAGAGCTCAACAATCACGCAAAGGTGCACAGTCAGGCGAAACCACACACTTGTGATATATGCGGGAAGCGTTTCACGGAGGGTTTGAACCTGCGCAAGCACATGCTTGTGCACGTCGAGGGCAAGACGCCCGAGTGTCCGTTCTGCGCAAAGGCTTTCACTCTGCGCAAGAACCTTAAGAGGCATCTAGAGCTGGATTCGTGTCTGAGACGACTCGATCTCAACACGAGCGAGTGTATCAGTCCCCCAAGCGGGAACAAGGTGGTAGATTCTGGCGGGTCGTGGAGTACGGACGTGGAGACAACGAACGCAAGTGTGGGGGGCTCCGCGCAAAACCCGGATGATCCGTCGGGCAAGAATGCGATGGACAAGACGTTGGATGACATAATGGCTGCGGCGAAGGAAGCGAGCGTCGAGGTGTTCTTGGAGCAGGAGGGATCCGTCAGTCGAGTATTTCCGTGCACCATATGCGAGAAGACCTTCCTGAGGACGGACCAGTTGAAGAAGCACCTTATGGTGCACGGTGGCATCAAACCGCATGCGTGCACCATGTGCAGTAGACGTTTCACGGAGAAGGGCAACCTGTCGAAACACATGAAGACGCACGCGTACGAGAAACCCTATCCTTGTTCGTTCTGCGAGAAGGCATACACGCAAAAGAAGAATCTTGAACGACACATACTCTCCCACCAGAGTGACGATAACACGGCATGA
Protein Sequence
MQIKEEEYEEGVEPERGEESPSQKRLEEDEDYSAEDHIGTQADSETGDDGIKSETLEDDADGLSGSQEIIPVGDMVEVKVEEVQVDDDLCDAIGEDDVESILPDNGRVDSSPCRNRLTVCDGSISYKSSAMVGGREEFMCAVCEEIFLDLDSLRCHMPCSVRTSGPVPTGIVGNLGGRAMDWERELGESYGTGRMKEECDVGVVSGDPLGVDAASGTIGDGSRYVPRGYSGNLSRGAHGSKSGNVAMNRKGPRARNMRATARGIGRPRPVISASVVTDKTISYQCDMCRHGFSRLDKLKKHIQSHSEEGGYACPTCGKSFRTRWSLKNHRKSHFRVTQYECPICSRKFSRPQHLEAHRATHGTGTEYQCGICRKTFPQSSYLEMHLKTHEGDESTQCHICGKRFSRKNVLTVHLRVHMGIKPYECQVCHKRFSQKVNLKTHAATHEGTQPYSCDLCHKSFADKADLNRHVRMHSGTPRPYQCHLCGKTYAQNKSLLTHLENHPPSVGFKANPDLPSHSGMALEVKPEVTMPEPCVTPDLSHLPVSITRVKLNPASQKNDGSGNRGQVRMKASPSQSGLVPEPSFSISPVIGPVVPARNRMVDLGSPDRDEKPVLNLGLDLTSKDFEGNHHEAISMMGHPETGPKVRPYKCQICHKCFGHKEELNNHAKVHSQAKPHTCDICGKRFTEGLNLRKHMLVHVEGKTPECPFCAKAFTLRKNLKRHLELDSCLRRLDLNTSECISPPSGNKVVDSGGSWSTDVETTNASVGGSAQNPDDPSGKNAMDKTLDDIMAAAKEASVEVFLEQEGSVSRVFPCTICEKTFLRTDQLKKHLMVHGGIKPHACTMCSRRFTEKGNLSKHMKTHAYEKPYPCSFCEKAYTQKKNLERHILSHQSDDNTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-