Hass001138.1
Basic Information
- Insect
- Hestina assimilis
- Gene Symbol
- -
- Assembly
- GCA_016906905.1
- Location
- JAFDUZ010000001.1:3208793-3221268[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 11 7.2 1.0 1 23 241 263 241 263 0.96 2 12 0.21 19 6.5 1.7 1 23 270 293 270 293 0.95 3 12 0.1 9.3 7.5 5.0 1 23 297 319 297 319 0.96 4 12 0.00071 0.064 14.3 0.2 1 23 324 347 324 347 0.95 5 12 0.00028 0.026 15.5 1.1 1 23 353 376 353 376 0.95 6 12 0.013 1.2 10.3 2.0 3 22 392 411 391 415 0.92 7 12 6.1 5.5e+02 1.9 0.1 2 23 423 443 422 443 0.80 8 12 0.00056 0.05 14.6 0.2 2 23 460 482 459 482 0.95 9 12 6.8e-06 0.00062 20.6 1.4 2 23 492 513 491 513 0.97 10 12 0.00024 0.021 15.8 0.1 1 23 519 541 519 541 0.97 11 12 0.0002 0.018 16.0 1.1 1 21 547 567 547 567 0.97 12 12 2.7e-07 2.5e-05 25.0 3.9 1 23 612 635 612 635 0.98
Sequence Information
- Coding Sequence
- ATGGATACTACGAAAATAAATCAAACTATATGCAGGCTATGCTTATCTACGAATAGAAGAGTTTTACATATAAAAAACACATATTTACATGAAGTTTACGAAAAACTAACAAATATTACATTAAATTCCAACTACATCCAATACTTATGTTATATATGTGTCAAAAGATTAACACACTGTCATAAGCTGATCCAGCAGGCTGTTATAACAGACAAACTGTTGAAAGAGGCACTGCAATGTGGAATAGAGATTAATGATATACCACAAACGAATACATACAGTCTGTCCGTGTCATCAACTATCAATCTATCACTAGATCCTATTGAGATTGATGTCAAAGAAGAAAATGCTAAAGTCAAGAAGGAACTTGATGACAATAATGAAGATGCCGATAAAAGTATTGAAAATGATGGTGGGATTGGCACACAAGAACAAGATGGCTACTATACAGACACGGATGTCAAAGAATCAATCACAAATGCCGAAGCTGATTCAGAAATAAAACATCCTTTATCGGAGTCGGAGGACGATGAACCTTTGGTGAATATAAGTTTGAAGAAACATTTGGAGAAGAAATTAAATGAACCAGTGAAGGTTAAGAAAATTAAAAAGTACAATAAAGATACAAAAGTCGATGCTCAAGAACTTATCCTGGATGATGAGCAGCAGATGATGGAGATGATGGAACGTTCGAAGTCACTGAACTACCTAAACTCACCGTACAAGTGTGACCTGTGCTACAAAGGTTTCCTAGATTCGGTAGCGTTCGACAAACATAAAGAGAAGCATGATGAGGTAAGCGGTCCTTACGAGTGTAAGCTGTGTCATTTGAGATACCTGACGGTAAAGTCGCTGCGCGCGCACACCGCCTCGACGCACTCGAGACGGTACTCCTGTAACATATGCGGGCATCGAACCCACACTAAACACCAGGCGAAAGCTCACGAACAATGGCACAACGGACACACATACCCTTGTAAGCCCTGCGGTCGAACTTTCAGTAAGCCGACGTCGTACTTGTCGCACGTGCGCGCGTGGCACGCGGACTCGTCGGAGCACGTGTGCCGCGAGTGTGGAGAGAGCTTTGCGCGGGAGCACGGCCTGATCATGCACAGGACCAAGGCCCATCGGGGACAGACGAAAACAACAACAGAACCGGAATCGGAGAGACATTGTACGGAATGCGATATAAAGTTTTCAACGTCCGAAGCGAAGATGCGTCACCTACTAACGTCTAAGAAACATTTTATTTTTAAAGATAACGACAAGTGCTCGGTGTGCGGAGTGAAAGTGGGCGCGTCCCTCCGCGCCGCGCACGCGCGTCGTCACGTGCGCGCCCTCGCCCCGCGCCCCGCGCCCGCGCCCCCACTCGCCCTCCCCTGCGCTCAGTGTGACTCGACGTTCCCGAGTCGTGCAAAGCTCCAGAACCATGTCAGAAGGATACATTTGGGTTTGAAGTATAATAAGAATATTGTGTGCGAGATATGCGGGAAGAGTTGTACGTCGAATGCCACGCTGAGCTACCACCAGCGACGGCACACGGGCGAGAAGCCGTACGCCTGCGAGTCGTGCCCGGCGCGCTTCGTGAGCCGAGAACAGCTGCGCATCCACGCGCGCAGCCACTCCGGCGAGCGGCCCTACAGCTGCGCGCTCTGCGGGAACTGCTTCAGCCAGAAACCAGCTCTCAACCGGCACTACCGACCAGAAGCCTGCTCTCAACCGGCACTACCGGGTGAGTGGGGAGGGGGTGATTGCCTATGGTCTTCTCGGCACTGCTTCAGCCAGAAACCAGCTCTCAACCCGCACAACCGGGTGCACACGGGGGCGAAGCCCTACGAGTGCCACGTCTGCCACAAGCCCTTCAGCCAGTCGAACTCGCTCAAGACTCACATACGCACAGTGCACCTCCGCCTGCCGCCCAATAAGAAGAAGAAGGAAGTGAATCCTCTCGATGCTGAGAAAATAAATAGTTCTGATAATTTATGA
- Protein Sequence
- MDTTKINQTICRLCLSTNRRVLHIKNTYLHEVYEKLTNITLNSNYIQYLCYICVKRLTHCHKLIQQAVITDKLLKEALQCGIEINDIPQTNTYSLSVSSTINLSLDPIEIDVKEENAKVKKELDDNNEDADKSIENDGGIGTQEQDGYYTDTDVKESITNAEADSEIKHPLSESEDDEPLVNISLKKHLEKKLNEPVKVKKIKKYNKDTKVDAQELILDDEQQMMEMMERSKSLNYLNSPYKCDLCYKGFLDSVAFDKHKEKHDEVSGPYECKLCHLRYLTVKSLRAHTASTHSRRYSCNICGHRTHTKHQAKAHEQWHNGHTYPCKPCGRTFSKPTSYLSHVRAWHADSSEHVCRECGESFAREHGLIMHRTKAHRGQTKTTTEPESERHCTECDIKFSTSEAKMRHLLTSKKHFIFKDNDKCSVCGVKVGASLRAAHARRHVRALAPRPAPAPPLALPCAQCDSTFPSRAKLQNHVRRIHLGLKYNKNIVCEICGKSCTSNATLSYHQRRHTGEKPYACESCPARFVSREQLRIHARSHSGERPYSCALCGNCFSQKPALNRHYRPEACSQPALPGEWGGGDCLWSSRHCFSQKPALNPHNRVHTGAKPYECHVCHKPFSQSNSLKTHIRTVHLRLPPNKKKKEVNPLDAEKINSSDNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -