Hass003685.1
Basic Information
- Insect
- Hestina assimilis
- Gene Symbol
- -
- Assembly
- GCA_016906905.1
- Location
- JAFDUZ010000030.1:1759393-1762278[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.15 13 6.9 1.1 3 23 71 91 69 91 0.95 2 20 0.21 19 6.5 0.1 2 23 121 143 120 143 0.96 3 20 0.0029 0.26 12.3 1.2 2 23 166 187 165 187 0.97 4 20 0.027 2.4 9.3 0.2 1 23 191 213 191 213 0.91 5 20 2.1 1.9e+02 3.3 4.8 1 15 218 232 218 241 0.77 6 20 1.2 1.1e+02 4.1 1.0 2 23 249 271 248 271 0.93 7 20 6.2e-05 0.0056 17.6 1.3 2 23 279 301 279 301 0.97 8 20 3.7e-06 0.00033 21.5 0.7 1 23 307 329 307 329 0.98 9 20 5.6e-05 0.005 17.7 1.6 1 23 335 357 335 357 0.99 10 20 7.3e-05 0.0066 17.4 2.4 1 23 363 386 363 386 0.97 11 20 0.017 1.5 9.9 0.9 1 23 455 478 455 478 0.93 12 20 1.1 1e+02 4.2 0.1 2 23 505 527 504 527 0.93 13 20 0.0037 0.33 12.0 3.1 2 23 550 571 549 571 0.97 14 20 0.23 21 6.4 1.0 1 17 575 591 575 597 0.86 15 20 0.098 8.8 7.5 0.6 1 23 602 625 602 625 0.95 16 20 0.33 30 5.9 6.7 1 23 632 655 632 655 0.95 17 20 0.00091 0.082 13.9 0.7 2 23 663 685 662 685 0.96 18 20 0.0058 0.52 11.4 3.4 1 23 691 713 691 713 0.97 19 20 5.9e-05 0.0053 17.7 1.8 1 23 719 742 719 742 0.98 20 20 0.032 2.9 9.1 4.8 1 23 748 771 748 771 0.94
Sequence Information
- Coding Sequence
- ATGAATTGTGAAACAGTGCTGAATTCGAAAGCAACAGTTGAAAAGGTCAAAATAAAAGAAGAGAAAAATCCGAATAAAATCAAAATCGTCGTAATAAAAAAGTTATCGGAATATCAAACTGTGCTACAAAAACATCGCGCGAATTTGAAAGATATATTACAATGCTCCAATGCGACGCCTATTCGTGGTCACACTGACAACGGTTATGGCTGTAACTTTTGCCAAAACCAATATCACGATCCTGTTGAATTGAAAAGGCACACATTGGAGCATACTGCTAGCTTGGACTCCCAAAATCTCCATAAGTTAGTGCCACGTGATCTTAACGAATTCTGCTTAAAATTAGACATAACCAATCTTAAATGTAAGTTGTGCGAAAACAGTGTTGATTCGATCGAAAAGTTGGTTGAACATTTGAAAACTGTACACGAGAAACAATGTTTCACTGACATCACACAACAAATACTACCCTTCAAGTTCGAAAGTGAACGTCTACAATGTTATATATGCAAGAACGTATTTAACAAATTCAAGAAATTAATGGAACACATGAATGTCCACTACAGAAATTACATTTGTGATGTTTGTGATGCTGGTTTCGTGAATAGAAGGAAGCTATACTACCACAAAGTAGCTCACAATACAGGGTCATTTTCGTGCGACAAATGTCCGAAAATCTTCAATACGTATAATAAAAAAAGATGTCATGAAAGACAATACCATGACAAAGGAATGTTAGTTAATAAATGCGGTCTCTGTAACGCATTGTTCAAAAATAATCGTCAGAAAGATAAGCACTTAGTTAAGGAGCATGGTGCGTCATCGTTTGCGAGAAAATGCCAAGCTTGCGACAAAGTTTTCGTTCATCAAAATGCATTGATGATTCACATGAAAAGGTACCATTTAGTGGAGAGATCATACAAGTGTTCTGAATGTGGAAAAGGGTTCTTTTCGACGACAGAGCTAAGGGCACATATGGTCAAACATACTGGACAAAGAGAATACCGATGTGAAGTGTGTTTGAAATCATACGGTAGGAAATGGACGTTACATGAACACATGCGCATTCATGCGAATGATAGACGTTTTAAGTGTGAACAATGCGGACAGTCTTTCGTACAGAAGTGTAGTTGGCGTGGACACATGCGTGCAAAACATGGTATACAACGTAAAACCCTCAAAAAAGATCGAACAAAATCGAAAAAAGATCGTAAGGAAGATTACATACAGGAAATACCCGCTCAGGGTGCAACTTTACCTAAAGTGAGACAAGGAGAGCAATTAGAAAAACATCGTAATAACGTTAGAGAAGTTATTCTTTGGTCGAATGCAACACCGATTCGTTGTCGAGGCGGTATCGGTTACGCGTGTTGTTTCTGTACAAACCAGTTTCCAGACCCCGCAGATTTGAAGAAACACACAATACAGGAACATGACGATGTTACCAAATCAGTGTTCATGAAAGGAAGAGACATGTACGGTTATCTTGTAAAGCTAGACATAACAGCACTACAATGTAAACTGTGTGATATCAACATTGATACTCTAGAACAAATTATGGATCACTTAAAAGAAATACATGATAAAAACATTAATACCGATATCGCTAACCATATATTACCTTTTAAATTCGACAGCGAAAATCTACGTTGTTTCATGTGTCAAAATGTTTTCAATAGATTCAAAGCTTTACAGGAACACATGCACACACACTATAGGAATTATATTTGTAAAGTCTGCGACGCTGGTTTCGTTAACCGCCATCTTTTATTATGTCACAACGAAGGGCATAAGACGGGAACATTTGCTTGCGAACAATGTGATCAAATCTTTGATACTATACGTAAAAGAAAATTGCATGAAAGGAAAATTCACAATGGACTTAATATGCCACACAAATGTGGTTATTGCAATGAAAGATTTAAAGAGAATTGTCATAAGAATGAACATTTAGCTAAGGTTCACGGTGTAGTAGGGCCGTTGATAAAATGTCAAGCTTGCGACAGGACATTTGCGACCCAGCAAACTTGGTTATTGCATATGAAAAAGTACCATTTGATGCAGAGACAGCATAAATGCACAAGGTGTGAGATGGATTTCTTCTCGAAGAGAGAATTGACTGATCACATGGTTAAGCATACAGGGACGAGAGAATACCGTTGTGAGATGTGTTTCAAGTCATATGGGAGGTTGAAAACTTTAAAAGAACATATACGACGGTTACATCCGGAAGATAAAGATTTCAAATGCATGCATTGTGGACAATCTTTCGACAAAAACTTCGCCTTAAAATGTCACATAAATGCTAAACACGGAGAAAATGTTTAA
- Protein Sequence
- MNCETVLNSKATVEKVKIKEEKNPNKIKIVVIKKLSEYQTVLQKHRANLKDILQCSNATPIRGHTDNGYGCNFCQNQYHDPVELKRHTLEHTASLDSQNLHKLVPRDLNEFCLKLDITNLKCKLCENSVDSIEKLVEHLKTVHEKQCFTDITQQILPFKFESERLQCYICKNVFNKFKKLMEHMNVHYRNYICDVCDAGFVNRRKLYYHKVAHNTGSFSCDKCPKIFNTYNKKRCHERQYHDKGMLVNKCGLCNALFKNNRQKDKHLVKEHGASSFARKCQACDKVFVHQNALMIHMKRYHLVERSYKCSECGKGFFSTTELRAHMVKHTGQREYRCEVCLKSYGRKWTLHEHMRIHANDRRFKCEQCGQSFVQKCSWRGHMRAKHGIQRKTLKKDRTKSKKDRKEDYIQEIPAQGATLPKVRQGEQLEKHRNNVREVILWSNATPIRCRGGIGYACCFCTNQFPDPADLKKHTIQEHDDVTKSVFMKGRDMYGYLVKLDITALQCKLCDINIDTLEQIMDHLKEIHDKNINTDIANHILPFKFDSENLRCFMCQNVFNRFKALQEHMHTHYRNYICKVCDAGFVNRHLLLCHNEGHKTGTFACEQCDQIFDTIRKRKLHERKIHNGLNMPHKCGYCNERFKENCHKNEHLAKVHGVVGPLIKCQACDRTFATQQTWLLHMKKYHLMQRQHKCTRCEMDFFSKRELTDHMVKHTGTREYRCEMCFKSYGRLKTLKEHIRRLHPEDKDFKCMHCGQSFDKNFALKCHINAKHGENV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -