Hass003686.1
Basic Information
- Insect
- Hestina assimilis
- Gene Symbol
- -
- Assembly
- GCA_016906905.1
- Location
- JAFDUZ010000030.1:1762420-1765883[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.022 2 9.6 5.1 1 23 5 27 5 27 0.98 2 20 4.2 3.8e+02 2.4 0.2 1 14 33 46 33 47 0.89 3 20 0.0045 0.41 11.7 4.5 1 23 116 139 116 139 0.95 4 20 0.031 2.8 9.1 0.1 2 23 166 188 165 188 0.96 5 20 3.2 2.9e+02 2.7 3.0 2 23 211 232 210 232 0.96 6 20 0.00084 0.076 14.0 0.4 1 23 236 258 236 258 0.98 7 20 0.0021 0.19 12.7 1.6 1 23 263 286 263 286 0.96 8 20 0.18 16 6.7 3.0 1 23 293 316 293 316 0.97 9 20 0.0012 0.11 13.6 8.4 2 23 323 344 323 345 0.95 10 20 0.0011 0.1 13.6 0.5 3 23 353 373 352 373 0.98 11 20 0.00024 0.021 15.8 1.8 1 23 379 401 379 401 0.98 12 20 0.0029 0.26 12.3 0.7 1 23 471 494 471 494 0.91 13 20 0.051 4.6 8.4 2.5 2 23 566 587 565 587 0.97 14 20 2.5 2.3e+02 3.1 0.0 1 23 591 613 591 613 0.88 15 20 0.1 9.1 7.5 2.9 1 19 618 636 618 638 0.87 16 20 0.024 2.2 9.5 1.4 2 23 649 671 648 671 0.95 17 20 0.026 2.4 9.3 1.8 2 23 679 701 678 701 0.95 18 20 8.8e-05 0.008 17.1 2.1 1 23 707 729 707 729 0.97 19 20 3.4e-06 0.00031 21.6 1.8 1 23 735 757 735 757 0.98 20 20 0.00012 0.011 16.6 3.4 1 23 763 786 763 786 0.97
Sequence Information
- Coding Sequence
- ATGCAAAGACCTCACAAATGTTCGGAATGCGATCAAAAGTTTTACTCAGGATCTGCGCTGAAATGTCACATGTTAAAGCACACAGGAGCTAGAGAATTCCAATGCGATGTTTGCCTAAAATATTATGGTCGTCAATCCCTTGAGACTCTTAGTGAAGACAAGGATACTACTAAAATTACAACAGCGAGGAATTTGAAAGTTAAAGTTTCGAAAAGAATTAAAACTAACAAAAAAGAAAAGATAAAATTAAAACCTATAAAGGAGTTAGCAAAACATCATAATAATATAAAAGAAATACTGCAATGTTCAAATGCGACCCCAATTCATGGTAGAAGTGACTTGGGTTACCAGTGCTGCTACTGCAAGGAGCATTTTCAAAATGCCGCTGATTTAAAAACCCACACTTTACAACTACACAAAAATGGTACAAAACCTACATTCTTTCAAAAGAGAGATCTGAAAAAATACCACGTAAAAGTCGACATCACCGGATTACAATGCAATATTTGTAATAATAATATCGATAATTTAGACGAGTTGATAGATCATTTAAGAAACGAACATGATAGAAAAATTTATACGGATGTCAAAAATCACATAATGCCCTTCAAATTTGAGGATAGCAAATTGAGATGCTTTGTATGTTCAAACGTCTATTCAAGGTTCAAGATTTTATTTGAACACATGCACAAACATTATAGTAACTTCATTTGCGATGTATGCAGTGCTGGCTTTTTTAACCGTAGAGCATTATGGAATCATCAGAAACGACACAAAATGGGCGAATTTAAATGTGAACAATGCGATAAAGTCTTCGATAATATTCACAAAAAGAATGCTCACGTTACAACAGTTCATGTGCACGGATATTTACTCCATAAATGTCGTTATTGCAATCAAAAGTTTGGTGGATATCGGATGAAAGAAGAACACTTAAGAACGGCGCACGGTGTTGCGGAACGTGCGAAATGTCAAGCGTGTGAAAAGAGCTTTTGTAATCAAGACTCATTGCGGAAACATATAAAGCATCACCACTTAATGGAATATCAACATGGTTGCACTTTATGTGACATGAAGTTTTCTGGTAGAAAAAGTTTAGAGGAACATATGGTTAAACATACAAAAACTCGTAATTTCCAATGCGAGGTATGTCTTAAGCGTTACGGAAGGCAACAGACTTTGAAGCAGCACAAGCGTATACATGAGAATGATAGAAGGTACAAGTGTTCACGAAGATCTCAAAAGCAATTTTATTTCGAAGATAATAAAGATGTTAAAGTCGATGATGATGATGAAGAACAAAAACCGAAATTAAAAAAGGGTGGTGAGTTACAGAAACACCGTACAAATTTGAGAGAGATCCTTATGAATTCCAATGCTACACCAATCCGCTGTCGTGGTGGTATCGGATACGCGTGCTGTTTTTGCACAGAACAGTTCCCCGATCCTGCCGATCTGAAAAGGCATACTATAGATCAGCACGATGAAAAAACTAAATTCAACTTTATGAAAGGAAAAGACATGTTCAAGTTTCACGTGAAGATGGATATAACACAGCTCAAGTGTATCATCTGTGATACTAAAATTGATACTTTGGAAATACTGATTGATCATCTTAAAAACGACCACAAGAAAATTATGTTCACTGATATTAAAAATCATATGCTACCATTTAAATTTGACAGCGAAATACTTAGATGCTTCATATGTACGAACGTTTTCCACAAATTCAAATCCTTATTAGAGCACATGAATATACATTACAGAAATTATATATGCGAGGTTTGCAACGCTGGTTACGTTAGTCGTGTCATTCTATCACAACACTCAGAAAGTCACAAACTTGGTTCATTTAAATGCGATCATTGTCCAAAAATATTCGATACATTCAGAAAGAAGCGGTCGCACGAAAAGTGTGTACACACTCATTCGAATTCCTTAAACAAATGCGGGTATTGTAACGAAAAATTCAAGGATTATCGGAAGAAAGAGCAACATCTTGCTAAAGTGCATGGAATCGATAACCTGTTATTGAAGTGTCAAGCTTGCGACAAAACTTTTCCAAATCAAAAAGAACATACGGTACACGTGAAGAGACTTCATTTGATGGATCGACGTCATAAATGTACGGAATGTGATATGACGTTCTTTTCATCGGCTGAATTAAAGAGTCACTTGGTAAAACATACTGGATTAAGGAAATTCGAATGCGAAGTGTGCCACAAAGCATATGGTCGAAAGAAAACATTGAGAGAACACATGCGAATACATACTGACGATAGGCGGTTTAAGTGTGAACATTGTGGACAAGCGTTTGTGCAAAAATGTAGTTGGCGGGGGCACATGCGTGCAAAACATGGTGAACAGGTTTAA
- Protein Sequence
- MQRPHKCSECDQKFYSGSALKCHMLKHTGAREFQCDVCLKYYGRQSLETLSEDKDTTKITTARNLKVKVSKRIKTNKKEKIKLKPIKELAKHHNNIKEILQCSNATPIHGRSDLGYQCCYCKEHFQNAADLKTHTLQLHKNGTKPTFFQKRDLKKYHVKVDITGLQCNICNNNIDNLDELIDHLRNEHDRKIYTDVKNHIMPFKFEDSKLRCFVCSNVYSRFKILFEHMHKHYSNFICDVCSAGFFNRRALWNHQKRHKMGEFKCEQCDKVFDNIHKKNAHVTTVHVHGYLLHKCRYCNQKFGGYRMKEEHLRTAHGVAERAKCQACEKSFCNQDSLRKHIKHHHLMEYQHGCTLCDMKFSGRKSLEEHMVKHTKTRNFQCEVCLKRYGRQQTLKQHKRIHENDRRYKCSRRSQKQFYFEDNKDVKVDDDDEEQKPKLKKGGELQKHRTNLREILMNSNATPIRCRGGIGYACCFCTEQFPDPADLKRHTIDQHDEKTKFNFMKGKDMFKFHVKMDITQLKCIICDTKIDTLEILIDHLKNDHKKIMFTDIKNHMLPFKFDSEILRCFICTNVFHKFKSLLEHMNIHYRNYICEVCNAGYVSRVILSQHSESHKLGSFKCDHCPKIFDTFRKKRSHEKCVHTHSNSLNKCGYCNEKFKDYRKKEQHLAKVHGIDNLLLKCQACDKTFPNQKEHTVHVKRLHLMDRRHKCTECDMTFFSSAELKSHLVKHTGLRKFECEVCHKAYGRKKTLREHMRIHTDDRRFKCEHCGQAFVQKCSWRGHMRAKHGEQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -