Hass000315.1
Basic Information
- Insect
- Hestina assimilis
- Gene Symbol
- -
- Assembly
- GCA_016906905.1
- Location
- JAFDUZ010000014.1:5186868-5195538[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00035 0.031 15.2 0.1 2 23 197 219 196 219 0.94 2 12 6.5 5.9e+02 1.8 0.2 5 23 228 246 227 246 0.91 3 12 0.00037 0.034 15.1 3.7 1 23 281 304 281 304 0.94 4 12 0.19 17 6.6 0.3 5 23 313 331 311 331 0.94 5 12 0.048 4.3 8.5 1.6 3 23 339 359 337 359 0.96 6 12 0.00023 0.021 15.8 7.2 1 23 367 389 367 389 0.97 7 12 7.2e-05 0.0065 17.4 0.1 1 23 398 421 398 421 0.98 8 12 0.00019 0.017 16.1 0.2 1 23 427 449 427 449 0.97 9 12 7.4e-07 6.7e-05 23.6 3.8 1 23 455 477 455 477 0.98 10 12 0.00097 0.088 13.8 0.7 1 23 482 504 482 504 0.97 11 12 2.6e-06 0.00023 21.9 4.2 1 23 510 532 510 532 0.97 12 12 0.00012 0.011 16.7 2.9 2 23 539 561 538 561 0.95
Sequence Information
- Coding Sequence
- ATGGCACTAAACATAAAGGAATTGTGTCGATTTTGTGCTAAAAAGGAAGAGTTTTTTAAGGATTTAATAGACGAGAAAAATAAAAATGTCCTTAAAATGATACAAGAATTTATTCAAATACCAATTACTGAACATGACGACTTACCAACTAGAGTATGCATAAATTGTGAAGATAAAATGGTCTCCTTTCAGATGTTTATTTTAGAATGTTACAAAGTCCAAGAAACATTAAGAACGATGTACTTAGATGTAACTGAAAAGTATGCAATAAAACTCGAAGATGATATTGAAAATGATTTTAATACAACATCAATTAAGTCAGAGGTTAAACACGAATTTACAGCTGAAGATTTAGTAAGTGCAATTAATAATGAGGGATCCTTAAGTGGTTTGGAAGCTGAAGATTATTATATTATTGATAATCAGAATAGTGATAGTGATGGAGAAATGAGCGATGTGACATTAGCCACACTGAAGGAATTGAAAACTAAAAAGATTAAAAGAAAAGTTTTAAGTGAAACTGAGGAACTTGAATTTAAAAATTTATTAAAGAAACCCAACCTTAATATTAGAGATTTTGTCAAGTTAGAATGCAGTATATGTGAAGAAAGTATTAAAACGTGGAGTGAATTAAGAGTTCATTATGCGAGAATGCACAAAAGCAAACCAGTGCTGTTTTGTGTCTGCGGCTTTATCATCAGATCCAAAAGTGTTCTATACAAACATGTGTCTGACCATAGGATAGAAAGCAGGAAACTTAGAAAAAATGATGATACACTAGACTCTGATACACAGAACGGGAACCAATATTCTAATTTAAATGTTACAGATTTTGTTAATTTCACATGTTCAACTTGTCAAAAGGAATGTAAAAGTTGGTATAATTTAAAGTCCCATTCTGAAAGGATTCATAAGATATCTCCCGTCGTGAATTGTATTTGTGGAATAACCCTTAAGTCGAAATCTGTTCTATATAAACATGTACAAGATCACAAGAACCCCGATGTTATATGTTGTGACAAATGTCCTCGAATAACTAAAACGGTGGCTGCAATGAATAAACACAAAATGAGGCATGTACCGAAATCGGAGAGAAAGTTCTGTTGTTCGTCGTGTAACAAAATATGCACTTCCAAGGATTCATTGAAATCTCACATGCGATCACACATACCTCTAGAGGAAAGGAAAATATACCAGTGCGAAATGTGTGACCTAAAGTTCACGACCCCATCGGCGGCGGCGTCTCACAAGCGCGTAGTTCACGACAAGATCAAGAGCTACGTGTGCGACCTGTGCGGGTACGCGTGCGGGACGAGCGGCGAGCTGCGCCAGCACCGCGCCATACACAGCGACGACAAGCCATTCGTCTGCAGGAAGTGCTCCAAGACGTTCAAAACGTATTCGAACCTGAAGACTCACATGGACACACACGAGGACACATCGTACGCCTGCTTCGTGTGCAGCCGCGTGCTCAACAGCCGGCGCACGCTGCGGAAGCACCTGCTCGTGCACGAGGACAAGTGCCGCCACGTCTGCTCCTACTGCAACAAGGCCTTCAAGCGCAGGCAGACACTCAAGGTGCACATGTACACGCACACGGGCGACAAGCCGCTGACGTGCAAGTGGTGCGACGAGCGCTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCATCCCGACAAGATGGCCGTGCAGTACTGCTCCTACAACACGCACCTCAACATGCAGGAGGGCTATCTGAAAACTGACGCGGTTCCCGCCAAAAGTGACGTAGAAACTATATAA
- Protein Sequence
- MALNIKELCRFCAKKEEFFKDLIDEKNKNVLKMIQEFIQIPITEHDDLPTRVCINCEDKMVSFQMFILECYKVQETLRTMYLDVTEKYAIKLEDDIENDFNTTSIKSEVKHEFTAEDLVSAINNEGSLSGLEAEDYYIIDNQNSDSDGEMSDVTLATLKELKTKKIKRKVLSETEELEFKNLLKKPNLNIRDFVKLECSICEESIKTWSELRVHYARMHKSKPVLFCVCGFIIRSKSVLYKHVSDHRIESRKLRKNDDTLDSDTQNGNQYSNLNVTDFVNFTCSTCQKECKSWYNLKSHSERIHKISPVVNCICGITLKSKSVLYKHVQDHKNPDVICCDKCPRITKTVAAMNKHKMRHVPKSERKFCCSSCNKICTSKDSLKSHMRSHIPLEERKIYQCEMCDLKFTTPSAAASHKRVVHDKIKSYVCDLCGYACGTSGELRQHRAIHSDDKPFVCRKCSKTFKTYSNLKTHMDTHEDTSYACFVCSRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKMAVQYCSYNTHLNMQEGYLKTDAVPAKSDVETI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824962;
- 90% Identity
- -
- 80% Identity
- -