Hass005237.1
Basic Information
- Insect
- Hestina assimilis
- Gene Symbol
- Zfx
- Assembly
- GCA_016906905.1
- Location
- JAFDUZ010000011.1:11849171-11854217[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00066 0.06 14.3 2.1 1 23 132 154 132 154 0.98 2 12 9.4e-05 0.0085 17.0 4.0 2 23 160 181 159 181 0.96 3 12 0.01 0.94 10.6 6.7 2 23 207 228 206 229 0.94 4 12 0.00026 0.024 15.6 1.4 1 23 261 283 261 283 0.98 5 12 2.5e-06 0.00023 22.0 1.2 1 23 291 313 291 313 0.97 6 12 2.4e-06 0.00022 22.0 2.1 1 23 319 341 319 341 0.99 7 12 7.8e-06 0.00071 20.4 4.5 1 23 347 369 347 369 0.98 8 12 1.9e-07 1.7e-05 25.5 0.8 1 23 375 397 375 397 0.95 9 12 0.00051 0.046 14.7 2.4 1 23 403 425 403 425 0.95 10 12 5.3e-06 0.00048 21.0 1.1 1 23 431 453 431 453 0.97 11 12 2.1 1.9e+02 3.4 0.1 1 12 459 470 459 475 0.81 12 12 0.028 2.6 9.2 0.4 1 20 486 505 486 508 0.93
Sequence Information
- Coding Sequence
- ATGATAGATTTAACAAAAACTTGTCGGACTTGTATGAAAAGAGATGTTTCTTTAGTAGATTTGTTTGGTCCGCTGAAAATTGAGAATAACAGCGCATTGAAACTTGCAGACGTGTTAATGGAAATAACACCTCTTCAGATAGCAAGAGAAGATGGTCTCCCACAAAAACTTTGCGATGAATGTGAAAAAACCTTACAATTAATGCATATATTCAGAAATCAAGCACTCTATTCTGAGAATCAGTTGAAAAAAATAATTATTTCAAGTACCAAAATAAAAAATGAAAACATTGAGTACAATTTTAAAAATGAGGTGGAATATACTGATGAATTTGATGAATTTATACCAAATGATAATCTTATACTTGAAGAGTCTGAAGATGGAGGTGCTGAGTATACCTGTGTTATATGTAAAAAACAATACAGTAACTATGAGAAATATTTAAAACACCAATCAGTCCATGAAAAGCAAGAAAAATCCTGTCCAAAATGTCATACAAAGTTTTACAAAAAGTCCCTTTTAAGGGAGCATATGAATGAACATTGTCAGAAAAGAGATTTTCTGGAAACTGATACTGGAGACTACAATATTAGAGTTAAAATAGAAGATGAAGAATGCCAATGTTCAATATGCTTTATGCAATTTGATTCTCAAAAATATTTAAAAACACATTTAAAACAGCATCATAGCTTAGAAGAAAAACTTATAGAAACTATAGAAGCGGGTAACACATTCGATGAATTTGATTCAGATATAAAGTTAGAAATATCAAATGAGCAATATAAATGCACTGAATGTAATCTAGTATTTGAAAAACTGAGATCACTTATATCCCATTCAAAAAAACACAAGAATTTACAATCACAATTATTTAAATGCAATTATTGCAATCGAGGGTTCTCTTCTAAGGGACCTCTAAAACGGCACTTATTACTACATTCTGAAGAAAAGCCATATCAATGTACGGAATGTGCAAAGTGCTATGTCCGTCGTGATGCACTCGTCACTCATATGCGTAAACATAGTGATGTTAAGAAATACATTTGTGAACATTGTAATAAAGCGTTCAACCAACTGTGCACATTAAAAGACCACATCAGAACCCACACTGGCGAGAGTCCATTTCTCTGCTCTGAATGCGGTAAAGGCTTCAAGAACAGTTCTAACTTGCGGCAGCATCTGGCTCGTCATACAGGAATCAAGCCATTTGCATGTAATCTATGTCCTAAGACGTTTTCTACTAAAGGTCAAATGAAATGCCACATGGTCTCGCATACTGGCGACCACCCATACAAATGCGATAAATGTGACGCAACATTCACTAGAGCTAACTCCTTGAAGAAACACAATTTGATACACGTCGGGATAAAACCGTATGCTTGTGACAATTGTAACATGCGGTTCATGAGTACCGACCTCGCCAAGGTCTTGCGCATGCACATCGGACCGAATACATACCAATGCTCAGTATGTCAAGCGAAATTCAGATTGATGAAGGAACTAAGGCTTCACTACCCTATCCATTATACTGAAGGCGAAGCACCCACCCTGGATAAATCTATGGTCGTATTAAACGAATGTACCGATAACATAGACAATATAACTAAACCGACCACTGATGGACAAATAACTATAACTTTTAATAGAAATATTCTCGATAAAAATAGTAGTGGTGATATAACAATAAATATAGGTTCGGAAAAAATTGACTAA
- Protein Sequence
- MIDLTKTCRTCMKRDVSLVDLFGPLKIENNSALKLADVLMEITPLQIAREDGLPQKLCDECEKTLQLMHIFRNQALYSENQLKKIIISSTKIKNENIEYNFKNEVEYTDEFDEFIPNDNLILEESEDGGAEYTCVICKKQYSNYEKYLKHQSVHEKQEKSCPKCHTKFYKKSLLREHMNEHCQKRDFLETDTGDYNIRVKIEDEECQCSICFMQFDSQKYLKTHLKQHHSLEEKLIETIEAGNTFDEFDSDIKLEISNEQYKCTECNLVFEKLRSLISHSKKHKNLQSQLFKCNYCNRGFSSKGPLKRHLLLHSEEKPYQCTECAKCYVRRDALVTHMRKHSDVKKYICEHCNKAFNQLCTLKDHIRTHTGESPFLCSECGKGFKNSSNLRQHLARHTGIKPFACNLCPKTFSTKGQMKCHMVSHTGDHPYKCDKCDATFTRANSLKKHNLIHVGIKPYACDNCNMRFMSTDLAKVLRMHIGPNTYQCSVCQAKFRLMKELRLHYPIHYTEGEAPTLDKSMVVLNECTDNIDNITKPTTDGQITITFNRNILDKNSSGDITINIGSEKID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -