Hass003056.1
Basic Information
- Insect
- Hestina assimilis
- Gene Symbol
- -
- Assembly
- GCA_016906905.1
- Location
- JAFDUZ010000027.1:1141303-1161128[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0049 0.44 11.6 0.1 1 23 419 441 419 441 0.97 2 11 5e-06 0.00045 21.0 1.1 1 23 457 479 457 479 0.98 3 11 0.0003 0.027 15.4 4.7 1 23 485 507 485 507 0.98 4 11 2e-06 0.00018 22.3 2.8 1 23 514 536 514 536 0.99 5 11 1.5e-05 0.0014 19.5 0.1 1 23 542 564 542 564 0.93 6 11 1.6e-06 0.00014 22.6 0.0 1 23 570 592 570 592 0.98 7 11 6e-06 0.00055 20.8 1.7 1 23 598 621 598 621 0.96 8 11 0.00048 0.043 14.8 1.3 1 23 627 650 627 650 0.95 9 11 0.00014 0.012 16.5 0.8 2 23 657 678 656 678 0.97 10 11 1.5e-05 0.0014 19.5 1.0 1 23 684 706 684 706 0.97 11 11 0.0023 0.2 12.7 0.1 1 23 712 736 712 736 0.94
Sequence Information
- Coding Sequence
- ATGGCGATGAATACAACAAATGTTGTTTCACCAAAATTAAAGCCGGTCATGACGATACCGTCATCATCAACACTAAACCTAAAAGTGACAGTCGGTTCGTCCGTCCTCACACAGAGCATAAACACAAACACAACAGCCAACAAGAAAACAATGCTATTAAATCAAACCATAGATCCGCAACTGATGCTGAAACAGACTATAGAAAAAATGAAACCGATTTCGAGTAATATCAATTTACTATCTGTGTCAACGAAATCTAATGACGTTTTTCCGTCAAATCTAAATACAACTTTGACGTTTACCCAACCGTCAATGTCTATGGTTTCGACGGTTGCGAAAACGAATTCTATATACAGTTTCAATGTGAACTCTTTGCCGAAAGATTTCTTATCGTCGGCAATTGTGACGAAAATCGATGATAATTTTGATATAGAGAAATTAAAGAAGGAAGGTTCTATTGAAGTGTGTGACTTGGAGCAGAATGATGATCAGCCCATGGAAATAGATGAAGACTGTACTCTATCCATTCTAACAACTGAATCAGAAGAAAAATTATTTGAAGATGTGAAGGATGAAGATGACAAGTCAAAGTCTGAATATGTCGATGTGCGCTTGATGAATTCCGAGGGACGGTACGTGCTGAGCAAGCTGCAAGTGCTGCGAGAGGAGACGGAGGGGGAAGACGAGGATGGGGAAGAGGGAGTTGAGGATGGAGACGAACATGGATTCTTAATCTCCTATGCATACAGTATACTGCCTTGCTGTAGATCAGCTGACACTGGGGTGGTGCCGACCCATCCTGCCGTATGCAATAAAAGCCCCACCAACACAGTTATAATATTTAGTATAATTCCAGACACGATAGTGATGGAGGGCGAGAACGGGTCCGTGCTGCGCGTGCTGTCGGGCGGCCGCCTGGCGCTCGCCGAGCACGTGGACGATTCAAATGATGACTCCCAAATCGAGTTGCAAGTTTCTGGTGACGAGGAAACAGCCAACGCTATCATCGCAGCGACACAGGAAAAAGGTGGAGCCTTCATAAAAGTGGAATCCGGTGAGATGTATCGGGTACAGTCCGTGCAGAGCAAGACGGAGGAGGATACAAATAAAGTTGATAGTTCTATAGTAACGCAAGAAAACGGTCAATTTCGATGTTTGATGTGCGAGAAGAACGAAGAGAAAGATGAACTAGTGGTGGTGGGTGACGCGGAGACAACGATGCAACACCTCAAGACCGTCCACGGGGCGCGGATCTATATCTGCCACCTGTGCGGGGAAATCGTGCGCAAACGAGCGGACTACGTCGCGCACATCGAACAACACGCTAAGAACAATAAAAATATGACTAACACGGATAAGACGAAACTTTATGAGTGCAACATTTGTAAGAAGAAATACAGCTCTCGCACGCTGCTGTCGGAGCACATGAACGTGCACAGCGGCGCGCGGCCCTACGCCTGCCACGTGTGCGGGAAGAGCTTCGCCTCCAAGTACACGCACCAGTCGCACCTCAAGACGCACCTCGTTCGACCCAGGCCGTTTAAATGCAACCAGTGCGGGAAGTCCTTCTTCACTTTACAAAACTTGAACCAGCACGAGAAGACCCACTCTGGCATCAAGGACTTCATTTGTAATGTCTGTGGTAAAGCATTCGGCACCCAACACAACCTGGAGGTCCACGGCGTGGTCCACTCCGGGAGCAAGCCCTTCGTGTGCGGCGTGTGCGGGAAGGCCTTCGCGAGGAGGGCCGAAGTGCGCGACCACATGCGGATACATACAGGCGAGCGGCCGTTCTCGTGCGACGTGTGCGGCGCGAGCTTCACGCAGCGCTCGAACCTGCACTCGCACAAGCGCGCCACGCACCTCGACGACAAGCGCTACCGCTGCGCGCAGTGCCCCAAGCGGTTCAAGCGCCGGAGACTTCTGGACTACCACGTGAAGGCGTCGCACACCGGCGAGCGGCCGCTCAAGTGCGAGGTGTGCAGCGCGACCTTCGTGTACCCGGAGCACTTCAAGAAGCACGCCAGGATACACAGCGGGGAGAAGCCGTATGTCTGCGAAGTGTGCGGCAAGTCGTTCAACTCCCGCGACAACCGCAACACGCACCGCTTCGTGCACAGCGACCGCAAGCCCTACGAGTGCGTCGTGTGCGGCGCCGGCTACATGCGCAAGCAGCTGCTCTACCAGCACATGAACACCAGCGGTCATTTGGCGGAATCAATTGTCGTCAATCAGCCGAGAGTGACGAAACCTTCTGATATTATAAGGACGGAACCTCTCGTCGTTGAATCTGGTAAAGCGGAGAAATTCCACAACACGATATATGAAGCGACAGAACTACAACTAGAAGCGGACGATAAGACGCTTGTGTCTCCGGACGGTAGTACGAAATTTTTCATAAGCGAAGATAAAAAAATATATTTACAAGAAGGTAAAGCTATAAATCTAGTAGAAGAACCCGACGAATCGGCGTTATTGACACTACATAACATCGAGGGTGGTCTGAAGGCGGACGGGACGCTCATCGACGCCATCTCCGTGGAGCAGCTCAACGAGCAACAGGGAGGTCTCAGACTGGTGTCAGTTTCTCTATCGGACGGATCTAGCGGATGGGTGGCCATCAACCCTTAA
- Protein Sequence
- MAMNTTNVVSPKLKPVMTIPSSSTLNLKVTVGSSVLTQSINTNTTANKKTMLLNQTIDPQLMLKQTIEKMKPISSNINLLSVSTKSNDVFPSNLNTTLTFTQPSMSMVSTVAKTNSIYSFNVNSLPKDFLSSAIVTKIDDNFDIEKLKKEGSIEVCDLEQNDDQPMEIDEDCTLSILTTESEEKLFEDVKDEDDKSKSEYVDVRLMNSEGRYVLSKLQVLREETEGEDEDGEEGVEDGDEHGFLISYAYSILPCCRSADTGVVPTHPAVCNKSPTNTVIIFSIIPDTIVMEGENGSVLRVLSGGRLALAEHVDDSNDDSQIELQVSGDEETANAIIAATQEKGGAFIKVESGEMYRVQSVQSKTEEDTNKVDSSIVTQENGQFRCLMCEKNEEKDELVVVGDAETTMQHLKTVHGARIYICHLCGEIVRKRADYVAHIEQHAKNNKNMTNTDKTKLYECNICKKKYSSRTLLSEHMNVHSGARPYACHVCGKSFASKYTHQSHLKTHLVRPRPFKCNQCGKSFFTLQNLNQHEKTHSGIKDFICNVCGKAFGTQHNLEVHGVVHSGSKPFVCGVCGKAFARRAEVRDHMRIHTGERPFSCDVCGASFTQRSNLHSHKRATHLDDKRYRCAQCPKRFKRRRLLDYHVKASHTGERPLKCEVCSATFVYPEHFKKHARIHSGEKPYVCEVCGKSFNSRDNRNTHRFVHSDRKPYECVVCGAGYMRKQLLYQHMNTSGHLAESIVVNQPRVTKPSDIIRTEPLVVESGKAEKFHNTIYEATELQLEADDKTLVSPDGSTKFFISEDKKIYLQEGKAINLVEEPDESALLTLHNIEGGLKADGTLIDAISVEQLNEQQGGLRLVSVSLSDGSSGWVAINP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -