Hass003677.1
Basic Information
- Insect
- Hestina assimilis
- Gene Symbol
- -
- Assembly
- GCA_016906905.1
- Location
- JAFDUZ010000030.1:1723664-1727862[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0018 0.17 13.0 1.4 1 23 5 28 5 28 0.94 2 24 0.00029 0.026 15.5 1.2 1 23 101 123 101 123 0.98 3 24 0.0091 0.83 10.8 0.2 1 23 127 149 127 149 0.94 4 24 0.0058 0.52 11.4 0.2 1 23 154 177 154 177 0.94 5 24 0.0033 0.3 12.2 3.3 1 23 183 206 183 206 0.92 6 24 0.02 1.9 9.7 0.3 1 13 213 225 213 227 0.89 7 24 0.19 17 6.6 0.6 1 23 341 364 341 364 0.94 8 24 1.4 1.3e+02 3.9 0.6 2 23 389 411 388 411 0.93 9 24 0.038 3.4 8.8 0.1 1 23 435 457 435 457 0.96 10 24 0.00038 0.034 15.1 0.2 1 23 461 483 461 483 0.98 11 24 0.0011 0.099 13.7 2.0 1 23 488 511 488 511 0.96 12 24 0.014 1.3 10.2 0.3 2 23 518 540 518 540 0.92 13 24 0.063 5.7 8.1 6.4 1 23 547 570 547 570 0.96 14 24 0.00044 0.039 14.9 5.4 1 23 576 598 576 598 0.97 15 24 0.048 4.3 8.5 0.4 1 22 756 777 756 779 0.89 16 24 0.0056 0.51 11.4 1.8 2 23 805 826 804 826 0.96 17 24 0.01 0.92 10.6 0.6 1 23 848 870 848 870 0.98 18 24 8.2e-06 0.00074 20.4 1.0 1 23 874 896 874 896 0.99 19 24 3e-05 0.0028 18.6 0.3 1 23 901 924 901 924 0.96 20 24 0.00016 0.015 16.3 0.4 2 23 931 953 931 953 0.97 21 24 0.00011 0.0099 16.8 0.2 1 23 960 983 960 983 0.98 22 24 0.019 1.8 9.7 4.8 2 23 990 1011 989 1011 0.96 23 24 2.5e-07 2.3e-05 25.1 2.3 1 23 1017 1039 1017 1039 0.99 24 24 9.3e-05 0.0084 17.0 0.1 3 23 1045 1066 1044 1066 0.96
Sequence Information
- Coding Sequence
- ATGAAGAATTTGTACTTGTGTTTTTACTGTGATCAACAATTTACCGATCCAGCTGTTTTAAGACATCACACGAATATTAAACATGGAAGTCAAACATCGGTCCAAATTAATACAGCATTATCTAAACTTAAAAAGCATGAACTAGTGAAATCGGACATATCAGATTTGAGTTGCAGATTGTGTATATCAGAAATAAATAGTTTCGCAAATTTAAAACAGCATTTGATTGAAAGACACAGCTTGAATATAGATATAAACGCTCAAGATGGTATTATGCCGTTTAAAATAACTAAAAATAGTTTTCCCTGTGCTATCTGTGAGGAAAAGTTTGATGAATACAAAACGCTGAACCACCATATGAATACGCACTATCAAAATTTTATCTGCGAACAGTGTGGGTCAGGATTTGTAACACCAGATCGTTTGCGGACGCATGGTTTTTCTCATGAGAATGGAGCTTTTGCTTGTGAAATTTGCGATAAAATATTTCGTTCAATGAACGCGAAAAATGAACACTATGCCACAGTTCATAAGAAAGTAAAAAGACACCACTGCCCTTATTGCCCTGAAACTTTCCGAAATTATTTCCAGAGAAATAAACATATATCAGCGATACATGGAATGAAGCTTAAAGAATTTAAATGCTCGTTATGTCCAAAGGTGTTTACGTCAAGTGGATTGGACTCTATATCAACGGAAAAACAGACGCCGGCAAAACGGATCATACCGCTGTTTCAGGTGGCTTACGATCGGAGCCTTTGCAAACCTTTGGGGACGATAACAGCTTTTCGAAAATTGCGTCTTAAAAGTAAACCCAAAGCGCTGCATCCTGAGAGAAGTTATACGCCATCTCGTAGTCCATCACCAGTTTCTTCAGGGAGGAGGAGCCTATCGCCACTCAAAACTATAGCAACATTCGTACCCACACCAAGAGTCAAAAAACAAGCCGATTATCGTCAAAACGCACTAACAGTGTTTGAATTTTCTACTGTATATCCATTTATATATGGAAATAATAAGTTTAAATGTTTTATTTGTTCTCAACCTTTTCTCGAAACTTCCTTATTAAGACAACATGTCAATGAAAACCACAATTTTGCTCCATTGAAAAGATTACTCAACAATCGAAGAGAAAATGTATTGAAAGTCGATGTCGGCGAGCTTTCATGTAAATTATGTCAGATAAAACCTAAGGATTTGTTCCAACTGAAGATTCATTTAAAACAAGACCATCAAAAACCAATAGACCCAGATTTACAGGATAACATGATACCATTTAATTTAGAAGAAGAAGATGGTTCATATAAATGTGTTATATGCGATGAAATGTTTATTAAAGTGCGTATTCTAGTTATTCATATGAGCGTACATTTTAATAACTATAGTTGTGAGATTTGTGGGTCGGGTTTTATGACTTTGCGTCTTCTGAAAAAACATTTGGAAGTTCATGAAACTGGGAATTATCCTTGTGATAAATGTAATAAGGTATTTACCACAACTCATAAGAGATCGCTCCACATACGTGGTGTACATCTTAAACAGTATCCTCGCCGGTGTCCAATATGTCCAGAACGGTTTAATTCAAATTACAGAAGAACAATACATCTTCAGGATGTCCATAATCAATCAACTAGAGTTCACAAATGTGAGACTTGTGGTCGGGGCTTTAATCTCAAGTATCATTTAATTTGTCATACCCGATCAGTACATTTGCAGGAGAGGAATCATCAATGCAAGGTTTGCTTGCAAAGGTTTTGCAACAAGGAAACGTTAAAACGTCACATGGTAATCCATACTGGAGAAAAGAATCACAAGTGCGATATGTGTGGAATCATCATAGAAACAGATTCTTCGATATTATTAAAAGATGATGACGGGAATGAAATAAAACTTAAACTACTCAAGAATCCAATCAATATAGATAATCTTATTTGTGAATACGAAGATGATACAGATATAGAACCAAGCTCGCCATTAAAGACTAAAATATGCGACAAGAAACTTAATGTTTCGCAAAGAAAACAGATGAAACTAGAAAAATCAACAACAGTATCAATGTTAAAGGAGCCGTTACAAATAAACGATATAGCGATAGATCAGAAATTTGGAACGAAATCACTCGTATATAACGTGAAAACAGTTAAAGGCAGACATTATAACAACATAAGAAAGATGAATACCATAAAATATCATACGTGGAAACAAAATGCTTTGACACTTATCGAATTTTCGTACGTTTATCCGTTCATTCACGCGAGTAACAAGTATAAATGTTTTGTTTGTTCTAAAGTTTTCTTAGATGCAGCTCTTTTAAGGGAACATTCAACTCAGAGTCACACTATAAAGGATTTTAAGCAAGAACTCAGCAACAGAGTAAGAGACAAAAATCTTAAAGTTGATGTATCAGTTTTGCAGTGTAAAATATGTCAATCAGTGTTTCATAATCTTCAGTCATTAAAAGTGCACCTGAAAGATCATGGTAAAAATATAGACCCGAATTTTAAGGATAATATTATACCTTTCAAACTGGAAGGAGATAATTTTCAATGTCAAATATGTAACGAGACGTATCTCAAACTGCGTCTACTAATCATTCATATGAGCAAGCATTTCAATAACTACAGCTGCGAAATTTGTGGTTCTGTATTTATTTCACTACATCTCTTAAAGCGGCATTTACAAACGCATAAAGTGGGTAACTTTCCTTGTAATATATGTGAAAAGGTTTTTAGTAATTCAGCAAAAAGGACCATGCATATGAGAGGGGTTCATTTGAAACAATATCCACGCACTTGTCCAATCTGTCCTGAAAGATTTAATTCTAACTATCAAAGATCAAAACATTTGAGAATCGTCCACAATCAAAGCTCAGAGTTATATCGATGCGAAACTTGTGGCAGGGAATATGATATTAAATACCAGTTGTTGGTACATATAAGATCGGTTCATATGCAGGAGAGGAATCAGGAGTGTAGTATTTGTCATTCTAGATTTTTCTCGAAGTATTGCCTGTCGAGGCACATGGTGATTCACACAGGTGACAAAAATTTCAAATGTGAGACCTGTGGAAAAGCTTACACGAGGAGAAAAAATCTAAAGGAACATTTAAAGACCCACACGGTTGTGGAAATATGTTCAATTTGTGGACGTGAATTTGTTGATCGTGCAACTTTAGTAGAACACATGAACAATTCGCACGGAGTAATATAA
- Protein Sequence
- MKNLYLCFYCDQQFTDPAVLRHHTNIKHGSQTSVQINTALSKLKKHELVKSDISDLSCRLCISEINSFANLKQHLIERHSLNIDINAQDGIMPFKITKNSFPCAICEEKFDEYKTLNHHMNTHYQNFICEQCGSGFVTPDRLRTHGFSHENGAFACEICDKIFRSMNAKNEHYATVHKKVKRHHCPYCPETFRNYFQRNKHISAIHGMKLKEFKCSLCPKVFTSSGLDSISTEKQTPAKRIIPLFQVAYDRSLCKPLGTITAFRKLRLKSKPKALHPERSYTPSRSPSPVSSGRRSLSPLKTIATFVPTPRVKKQADYRQNALTVFEFSTVYPFIYGNNKFKCFICSQPFLETSLLRQHVNENHNFAPLKRLLNNRRENVLKVDVGELSCKLCQIKPKDLFQLKIHLKQDHQKPIDPDLQDNMIPFNLEEEDGSYKCVICDEMFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHETGNYPCDKCNKVFTTTHKRSLHIRGVHLKQYPRRCPICPERFNSNYRRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHTRSVHLQERNHQCKVCLQRFCNKETLKRHMVIHTGEKNHKCDMCGIIIETDSSILLKDDDGNEIKLKLLKNPINIDNLICEYEDDTDIEPSSPLKTKICDKKLNVSQRKQMKLEKSTTVSMLKEPLQINDIAIDQKFGTKSLVYNVKTVKGRHYNNIRKMNTIKYHTWKQNALTLIEFSYVYPFIHASNKYKCFVCSKVFLDAALLREHSTQSHTIKDFKQELSNRVRDKNLKVDVSVLQCKICQSVFHNLQSLKVHLKDHGKNIDPNFKDNIIPFKLEGDNFQCQICNETYLKLRLLIIHMSKHFNNYSCEICGSVFISLHLLKRHLQTHKVGNFPCNICEKVFSNSAKRTMHMRGVHLKQYPRTCPICPERFNSNYQRSKHLRIVHNQSSELYRCETCGREYDIKYQLLVHIRSVHMQERNQECSICHSRFFSKYCLSRHMVIHTGDKNFKCETCGKAYTRRKNLKEHLKTHTVVEICSICGREFVDRATLVEHMNNSHGVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -