Hass009640.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hestina assimilis
Gene Symbol
-
Assembly
GCA_016906905.1
Location
JAFDUZ010000013.1:7578801-7592012[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 7.8e-05 0.007 17.3 0.1 3 23 130 150 129 150 0.97
2 17 7e-07 6.4e-05 23.7 1.2 1 23 156 178 156 178 0.99
3 17 4.4e-06 0.0004 21.2 2.7 1 23 184 206 184 206 0.99
4 17 2.9e-06 0.00026 21.8 2.6 1 23 221 243 221 243 0.98
5 17 4e-05 0.0036 18.2 3.1 1 23 258 280 258 280 0.98
6 17 2.8e-07 2.5e-05 25.0 1.5 1 23 295 317 295 317 0.99
7 17 0.00012 0.011 16.6 2.8 1 23 323 345 323 345 0.98
8 17 8.8e-06 0.00079 20.3 2.1 1 23 351 373 351 373 0.99
9 17 0.028 2.6 9.2 1.8 1 23 380 402 380 402 0.98
10 17 4.7e-07 4.3e-05 24.3 2.3 1 23 408 430 408 430 0.99
11 17 0.033 3 9.0 1.8 1 23 437 459 437 459 0.98
12 17 1.9e-06 0.00017 22.3 1.5 1 23 465 487 465 487 0.99
13 17 0.00037 0.033 15.2 0.7 1 23 494 516 494 516 0.99
14 17 2.1e-06 0.00019 22.2 1.9 1 23 522 544 522 544 0.98
15 17 0.0016 0.14 13.2 0.3 1 20 550 569 550 572 0.93
16 17 2.9e-05 0.0026 18.6 1.3 2 23 579 600 578 600 0.96
17 17 2.8e-06 0.00025 21.8 1.4 1 23 606 629 606 629 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAACAGATCAAAGCAGAGCCTATGAGTTTTTACACACATCAACATGTAAACACCGGCCCCACAACAATAATGCGTTCAGATTCAAACCATGGCATCATCAACATGAATCAGCACCACCACACAGAAGACTCGAAGGACAGCCTCATAGTACAACATCAAGTACAACACCAACAGGAGCTGCTGGATCAGCACCAACAACAGGAACTGCACGATGATGATGTTGATAATTTAAGCTTCAAAGGTATGGATGATGAAGGAGTTGAAATGGATATGGATGGTCGACAATGTTCTCAGGGTATGGGAGTTGATATGGGATCAGTACAAACAAAAATGGAAGTTTCAAATGGAGGTGGAATGCCAAGATCAAAACCTCAGGCCTGCAAGGTTTGCGGTAAAGTTCTGTCATCTGCATCATCTTACTATGTTCACATGAAGCTACATTCGGGGAATAAACCCTTTCAATGCACGGTGTGCGACGCGGCGTTCTGTCGCAAGCCGTACCTGGAGGTGCACATGCGCACGCACACGGGCGAGCGGCCCTTCCAGTGTGACCTCTGCCTCAAGCGCTTCACGCAGAAGAGCAGCCTCAACACGCACAAGCGCGTGCACACCGATGAGCACATGCGCGCTTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTCAACAGACACAAGAAAATACACACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACACGGAAAAATACACACCGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGACCCTATCAATGCGACATCTGTGACAAGAGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCGAGCCTCAATATACATAAACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCCGCCTTCACGTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCCTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCGAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGCCGGCCCTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACCTGCAAGCAGTACCTCGAGATCCACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGCGACGTCTGCCTCAAGAGATTCGCGCAAAAATCCACACTCAATATACATAAAAGAACGCACACAGTGCAAGGGAGGCCGTATCAGTGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAAATACATATGCGCACGCACACTGGCGAGCGGCCCTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCTACACTGAACATTCACAAGCGCATTCATACCGGTGAACGTCCATATGCATGTGATATTTGCCAAAAACGGTTTGCTGTGAAGAGTTATGTTACGGCGCATAGGTGGTCGCACGTGGCGGACAAGCCGCTGAACTGCGAGCGGTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCCAGCGGCCCGTGCTACGAGTGCAGCGTGTGCGGGCGGACCTTCGTGCGCGACAGCTACCTCATACGGCATCACAATCGTGTGCACCGTGAGAACCACAGCAACGTGTCGGCGAACAGCATCGGCACCATTAACAGCGTCGCCACCAACACCAACAACTCCAATAACGGCAACTACGACTCGCCGGGTGTTTGCGACCTAAGTTTTGTGCCAATGGTGAATCGTTACATGACGTCTCAGGGGACGCAGGTGTCCATGCAAGATACGCAGAGTAAAATGTCCGCCATGTCGCCGCAGTCTATCTCCTCAATCTCGTCCCCGCCGCCGCCGCACACGCCCACTCCGCAGCCGCTGCCCGCGCTGCGCCTCGCCGACTGA
Protein Sequence
MFEQQIKAEPMSFYTHQHVNTGPTTIMRSDSNHGIINMNQHHHTEDSKDSLIVQHQVQHQQELLDQHQQQELHDDDVDNLSFKGMDDEGVEMDMDGRQCSQGMGVDMGSVQTKMEVSNGGGMPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHSSGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNGNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSISSISSPPPPHTPTPQPLPALRLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_01034828;
80% Identity
-