Hcom009009.1
Basic Information
- Insect
- Hesperia comma
- Gene Symbol
- -
- Assembly
- GCA_905404135.1
- Location
- FR990039.1:4817650-4823459[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.097 11 7.4 1.0 1 23 198 221 198 221 0.97 2 11 0.005 0.58 11.5 0.2 1 23 227 249 227 249 0.98 3 11 3.8 4.4e+02 2.4 0.2 1 23 253 276 253 276 0.76 4 11 0.12 14 7.1 1.4 1 14 280 293 280 304 0.86 5 11 0.00014 0.016 16.3 0.2 1 23 307 330 307 330 0.97 6 11 0.00071 0.082 14.1 1.9 3 23 335 356 334 356 0.93 7 11 0.23 27 6.2 0.4 2 22 365 385 364 389 0.92 8 11 0.12 13 7.2 0.5 1 23 395 418 395 418 0.95 9 11 0.31 35 5.9 1.2 1 23 424 447 424 447 0.95 10 11 5.1e-05 0.0058 17.7 0.2 3 23 458 478 457 478 0.98 11 11 5.3e-05 0.0061 17.7 0.5 1 23 484 507 484 507 0.95
Sequence Information
- Coding Sequence
- ATGTGCCGGGAATGCCGTAATATCCTCAAGAGTGCTCAGAAATTCCAAGCAACAGCTAAAGCAGCATTCAAATCATTACAAATGGCAATAAAATCAGATGATGAAATGATACAAGATTCAAAACCGTCCACCCTTACACATTCAACTAGCAAACCTGAAAACAAAGCAATAAATGCAATGAAACTCATACTTGAAAATAACACAATAGTTAATGAAGAGAAAGTGAATGACCAAAGCGAAGAAGTCAAAGCAGAATTCGAATATGTTCTTGAAGATATCAAACAAGAAAAACAAGAGAAAAATGAGTACGATGTTAAAATAGAAATGGATGATACAGAGAGTATAAATGATGAAGCCGACTTTATAGATAACGAAGAAACTGCTATAAAAAAAGAAGTAGCAGAATTAGAAGTTACAAACCAAATTAAGTCAGAACTAAATAAGAGAAGGAGAAAGAGAAAATACATGGCGTTTAGAAGAATTGATTACAAGAGTTTTTCGACGTTGTGTGTAGCTGTGGCCATAGATGATGAAGAGAGACAGCGGTGTGTGGAGGCTGAGAAAAAAAATGCAGAGTATTTGAATTCGAATTTCAAATGTGACATGTGCGTAGTTGGTTATAACAAACGACAGAGGCTTGACAAGCATTTGAAGGTGTATCATTCTGAGTCGCACCCCTACGAATGCACAGTGTGTGGCGTGCGCGTCTCCTCGAAGTTGATACTAATGAGGCACGTGAAGACGCACGGCCGCAAGTACGTGTGCTCGTTCTGCGGGTTCGAGCGGCTGACAAAGCGCGCGGTGTTCGCTCACCTGGCGCGCGTGCACCGCGTCGCTTACGAGTGTCGCGATTGCGGTCTGCAGTTCCGTGACAAATATAGAGAGTTTTACAAGCATTACACCAGTATGCATAAACGGTTTGAGTGTGATTACTGCGGGTTCGGAGGATCAACGAAAAGTCGCCTGATCAATCATATTAAGGTAAACCATTGCGAGAACATATGCAAGTACTGTAACAAGAGGTATGTAAATTACCATTCTATGATGAGGCATATAGCACTGAGACATACAAAGGAAATCTCCGAAGAGTCATACTGTGTGGAGTGTAACATGCAGTTTGATAATATTACCCTATACGACAGGCATTTGAAGACCAGCGTGAAACATAAGCCGAAGGTTGTTTACCCCTGCACGGAGTGTTCTAACGTTTACGCGAAAAAAATCGCAAGGACCAATCATTACAAGTACATACACTTGCAGAAAACTGATTATTACTGTGACGAGTGTTCTAGGTACTTCCTGAATGGTTTTCGCCTGCGTACGCACATAGCCACGTACCACAATCATATTCAGGCGCCAAAGAACAAGATATGCTCTTACTGTGGCCGTGGCTTTGTGACAAACCGTATCCTTGAGAACCACATACGGACACATACTGGAGAACGTCCGTTCTCGTGTTCGCATTGTACGGCTACATTCGCCCAAAAATCCGCCCTAGTCACTCATGCCCGGGCAATACACAAAGTTATGATGAGATATGCCACTAAAGAAAAAAATTGTAATAATACCGGTGCTTAA
- Protein Sequence
- MCRECRNILKSAQKFQATAKAAFKSLQMAIKSDDEMIQDSKPSTLTHSTSKPENKAINAMKLILENNTIVNEEKVNDQSEEVKAEFEYVLEDIKQEKQEKNEYDVKIEMDDTESINDEADFIDNEETAIKKEVAELEVTNQIKSELNKRRRKRKYMAFRRIDYKSFSTLCVAVAIDDEERQRCVEAEKKNAEYLNSNFKCDMCVVGYNKRQRLDKHLKVYHSESHPYECTVCGVRVSSKLILMRHVKTHGRKYVCSFCGFERLTKRAVFAHLARVHRVAYECRDCGLQFRDKYREFYKHYTSMHKRFECDYCGFGGSTKSRLINHIKVNHCENICKYCNKRYVNYHSMMRHIALRHTKEISEESYCVECNMQFDNITLYDRHLKTSVKHKPKVVYPCTECSNVYAKKIARTNHYKYIHLQKTDYYCDECSRYFLNGFRLRTHIATYHNHIQAPKNKICSYCGRGFVTNRILENHIRTHTGERPFSCSHCTATFAQKSALVTHARAIHKVMMRYATKEKNCNNTGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -