Basic Information

Insect: Hesperia comma
Gene Symbol: -
Assembly: GCA_905404135.1
Location: FR990015.1:17509539-17510990[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00036 0.041 15.1 1.2 1 22 64 85 64 87 0.90

2 9 0.24 28 6.2 0.1 2 23 113 135 112 135 0.90

3 9 0.014 1.7 10.0 4.3 3 23 160 180 158 180 0.96

4 9 0.0078 0.9 10.9 0.4 1 23 184 206 184 206 0.96

5 9 0.00033 0.038 15.2 0.7 1 23 212 235 212 235 0.97

6 9 0.00046 0.054 14.7 1.3 2 23 243 265 242 265 0.95

7 9 3.7e-07 4.3e-05 24.5 1.3 2 23 271 293 270 293 0.97

8 9 0.12 14 7.1 0.9 1 23 299 322 299 322 0.91

9 9 4.1e-06 0.00047 21.2 1.7 1 23 328 351 328 351 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00036	0.041	15.1	1.2	1	22	64	85	64	87	0.90
2	9	0.24	28	6.2	0.1	2	23	113	135	112	135	0.90
3	9	0.014	1.7	10.0	4.3	3	23	160	180	158	180	0.96
4	9	0.0078	0.9	10.9	0.4	1	23	184	206	184	206	0.96
5	9	0.00033	0.038	15.2	0.7	1	23	212	235	212	235	0.97
6	9	0.00046	0.054	14.7	1.3	2	23	243	265	242	265	0.95
7	9	3.7e-07	4.3e-05	24.5	1.3	2	23	271	293	270	293	0.97
8	9	0.12	14	7.1	0.9	1	23	299	322	299	322	0.91
9	9	4.1e-06	0.00047	21.2	1.7	1	23	328	351	328	351	0.98

Sequence Information

Coding Sequence: ATGAGCCGGACGAGAGCATCAATAAAACGAAAGAGGACTTTAAAGCCGCAAATCGAGGATACTGACACGATACCTAAATTAGTTAATCGTGAAAAGCATCCACCAGAGATGCAGAAACAGTGGCATAACTTGACCACATTGCTAAAATACTCTAACGCAACGCCATTCAAAGACAGGAACGATGCAGGATACGTTTGCGCGTACTGCTACAAGACATATCCCGACCCTGACACTTTAAGGAACCACAGTACGCACGATCATGTCAGGGAAAAGCCGTCGTACAAAGCTTGCTCGGGGATGAGCAGTTTCGTAGCATTCCTAGACATTGTAGATTTAAAGTGTACAATCTGTGATCTCCCTATGGATAGCTTAAGGACGTTGACGGAGCACTTAGTTAATGTACATCAGAAGAAGTACTATCTAGAAGTAACCGATTACTTCCAGCCGTTTAAACTAACGAACGAACAGCAGATGAACTGCTGCCTCTGCAACGAAGTATTTCACAATATGAAGCTGTTGATGCAGCATATGAACAATCATTTTAGGAATTTCATTTGCACCGTATGCGGTGCTGGATTCGTGAACAGCTTTCGACGTAATCGACATGAGACAACGCACGCGAAGAAGTCTAGTTTCTCTTGCAAGTATTGCGGACAAATTTTTACCGCAGAATCGAAGAAAAAGGCTCATGTGAATACCGAGCACAAAGGTATAGCTGGCGACAGTGTATGTCAGATTTGCAAGGCTAGGTTCAAGAACTATTATCAGAAGACGAGACATATGATGCAAGTCCACAATGTAGAAGGTATCAAATGTGACAAGTGCGATAAGAAGTTTAATTTGAAATCAAACTTGATGCTCCACATGCGTAGTGTACACTTGAAAGAACGCCCGTTTGAATGCTCTGTCTGTAACATGGGGTTTTTCATAAAGAGACACATGATAGGTCATTACATGGCGACACACACAAACGAGAGAAAGTTTAAGTGCGAAGTGTGCGGCAAAGCCTATGCAACCCAGAATAGTAAAAGAAAACATATGAAGAAAAATCATGGAATATCTAAAAATTCAATTCTTTCTAATGTGCCGAAGTAG
Protein Sequence: MSRTRASIKRKRTLKPQIEDTDTIPKLVNREKHPPEMQKQWHNLTTLLKYSNATPFKDRNDAGYVCAYCYKTYPDPDTLRNHSTHDHVREKPSYKACSGMSSFVAFLDIVDLKCTICDLPMDSLRTLTEHLVNVHQKKYYLEVTDYFQPFKLTNEQQMNCCLCNEVFHNMKLLMQHMNNHFRNFICTVCGAGFVNSFRRNRHETTHAKKSSFSCKYCGQIFTAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDKCDKKFNLKSNLMLHMRSVHLKERPFECSVCNMGFFIKRHMIGHYMATHTNERKFKCEVCGKAYATQNSKRKHMKKNHGISKNSILSNVPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00281721;
90% Identity: iTF_01439339;
80% Identity: -