Basic Information

Insect: Hesperia comma
Gene Symbol: -
Assembly: GCA_905404135.1
Location: FR990016.1:19427693-19440990[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 9.3 1.1e+03 1.2 0.5 2 11 256 265 256 277 0.78

2 14 0.98 1.1e+02 4.3 0.9 5 22 285 302 284 305 0.89

3 14 0.0061 0.71 11.2 2.5 2 23 407 429 406 429 0.94

4 14 0.002 0.23 12.7 0.0 1 23 435 457 435 457 0.97

5 14 0.012 1.4 10.3 0.1 1 23 467 490 467 490 0.92

6 14 9.6e-06 0.0011 20.0 1.6 1 23 495 517 495 517 0.98

7 14 3.7e-05 0.0043 18.2 1.0 1 23 523 545 523 545 0.97

8 14 8.8e-05 0.01 17.0 4.8 1 23 551 573 551 573 0.98

9 14 2e-07 2.3e-05 25.3 0.3 1 23 579 601 579 601 0.98

10 14 0.0088 1 10.7 5.5 1 23 607 629 607 629 0.97

11 14 0.0088 1 10.7 5.5 1 23 732 754 732 754 0.97

12 14 0.0088 1 10.7 5.5 1 23 857 879 857 879 0.97

13 14 1.4 1.6e+02 3.8 0.4 1 11 916 926 916 929 0.90

14 14 0.48 55 5.2 0.0 1 23 944 967 944 967 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	9.3	1.1e+03	1.2	0.5	2	11	256	265	256	277	0.78
2	14	0.98	1.1e+02	4.3	0.9	5	22	285	302	284	305	0.89
3	14	0.0061	0.71	11.2	2.5	2	23	407	429	406	429	0.94
4	14	0.002	0.23	12.7	0.0	1	23	435	457	435	457	0.97
5	14	0.012	1.4	10.3	0.1	1	23	467	490	467	490	0.92
6	14	9.6e-06	0.0011	20.0	1.6	1	23	495	517	495	517	0.98
7	14	3.7e-05	0.0043	18.2	1.0	1	23	523	545	523	545	0.97
8	14	8.8e-05	0.01	17.0	4.8	1	23	551	573	551	573	0.98
9	14	2e-07	2.3e-05	25.3	0.3	1	23	579	601	579	601	0.98
10	14	0.0088	1	10.7	5.5	1	23	607	629	607	629	0.97
11	14	0.0088	1	10.7	5.5	1	23	732	754	732	754	0.97
12	14	0.0088	1	10.7	5.5	1	23	857	879	857	879	0.97
13	14	1.4	1.6e+02	3.8	0.4	1	11	916	926	916	929	0.90
14	14	0.48	55	5.2	0.0	1	23	944	967	944	967	0.91

Sequence Information

Coding Sequence: ATGGAAGTATTTCTATATAATTCCAATGTTTGTAGATTATGTGGGGAAGAAAATGATAACGGAAGCCTTCTGTATTCTAGTGAAGAAAATAATCAAAACTTAAGTGATATAATTAATGCATATTTGCCGATCAGGGTGTCTGACGATGGACAGCTGCCTAGAACCATTTGTCCTGGCTGCACTATACAGCTGGAAGCAACTGTTGAATTTCTGAATTTAATTATAAATGGGCAGAAAGTTATACGACAACTACATGAGCGCGAAAAAGAATATTCAAAATCGGTTCTGAAGTCTGATGAGGCAGAAGTTATAACAGAGAACATTGTTTATGAAATAAATACAAGTGATGGAGTTTACCAAGTGGAACATCCCATCTCACTGCAAGTGGCTGGCTTGGAAAAGCCCAAGCGGAAGCGTGGCAGGCCTCCAAAGAAGCCCAAAACCCCTGAAGAGCTGGCAGCAGAGGCTGCGGCTAAGGAACAGCAAGCAAAGAAACAAACAATTACCAGAGACAAGGAGGAATCTTCTGGAAAACGCAAGAGAAAGACCCCCACAAGATTCAAGGAGGTGGTTCAGGGCGCAGAGCTGGAGCGTATATTCAAGGAGGAGGGCGTGACGGACGGCGAGGACAGCGAGCCGGAGCGGCGCCCGCCGCCGCGCGAGCCCGAGGTCATCGGCCATCTCGAGGCCTCGGGCGAGCTCGTGCTCTTCGTCAAGGGGAAAGGTCGCGGGAGGCCCAAAGGCCGCATGCGTCAGACGCACGAGCAGTGCGTGATATGCGGCATGGAGTTCTCGTGCGTGGGCCGGTACATGTCGCACGTGGCGCAGCACGGGCCGGTGCGCTACGGCTGCGGCTGCGGCCAGCAGTTCCCCAAGCGGCTGCACTACAACGACCACCAGCGGGAGACCGGCCACACCGGGCTGACGGTCGTGCCGTGTGACGATAACGACGCTAAAACCAAACGCCCTGTGGCGCCGATCCCGGTGGCGAAGGAGCCGGACAAGCCGGAGGCGCAGCCCGCAGCCCCGGCCGCGGAGACCGCGCCCGCGCCGGACGGGGCGGAGGCCCAGCCCGACACCGAAGCGCCCGCGCCGGAGGTGGCTGACTGCCCTAGTGCAGAGCCGTTGCCGGAGGGGCCGGAGCCGCCGGAGGAGCCGGAGCCGCCGGGGCCGGCCGGGGCGGAGGCGGTCGCGCCGCCGGCCGGCAAGCGCAAGCTCAAGTGCAACCACTGCGACAAGCTGTTCAGCAACAAGCAGAGCAAGTCGCTGCACATCAAGGCGGTGCACCTGGGCGAGCGGCCGTACGTGTGCCGCGAGTGCGGCGCGGCGTTCGCGTACCCGCGCTCGCTGGCGCTGCACGCCGTCACGCACCGGCGGCGCCGCGCGCGCTCCGGCGGGTACGCCTGCGATCTCTGCGGGAAGGTGCTGAACCACCCGTCGTCGGTGGTGTACCACAAGCAGGCGGCGCACGCGGCCGAGCAGTACGTGTGCGGCGCGTGCGGCAAGCGCTTCCGCCACCGCCAGCTGCTGCAGCGCCACCAGCTCGTGCACTCGCAGGCGCGCCCCTTCAGCTGCAAGTTGTGCACGGCGACGTTCAAGACGAAGGCGAACCTGGTGAACCACCAGCTGCTGCACTACGGCGTGAAGAAGTTCAGCTGCGAGATCTGCAAGCACCGCTTCGCGCACAAGACGAGTCTCACGCTGCACATGCGCTGGCACTCGGGCGTGAAGCCGTTCTCGTGCGAGGTGTGCGGCAAGAGCTTCAGCCAGAAGGGCAACCTGTCGGAGCACGAGCGCATCCACACGGGCGAGAAGCCGTACGCGTGCGCGCACTGCCCGCGCCGCTTCACCACCTCGTCGCAGCACCGCCTGCACACGCGCCGCCATCTCAGGTGGGTGCTTGGCTGGTTGGCTGGTTGGTCATCCACACGGGGGAGAAGCCGTACGCGTGCGCGCACTGCCCGCGCCGCTTCACCACCTCGTCGCAGCACCGCCTGCACACGCGCCGCCATCTCAGGTGGGTGCTTGGCTGGTTGGCTGGTTGGTCATCCACACGGGGGAGAAGCCGTACGCGTGCGCGCACTGCCCGCGCCGCTTCACCACCTCGTCGCAGCACCGCCTGCACACGCGCCGCCATCTCAGGTGGGTGCTTGGCTGGTTGGCTGGTTGGTCATCCACACGGGGGAGAAGCCGTACGCGTGCGCGCACTGCCCGCGCCGCTTCACCACCTCGTCGCAGCACCGCCTGCACACGCGCCGCCATCTCAGGTGGGTGCTTGGCTGGTTGGCTGGTTGGTCATCCACACGGGCGAGAAGCCGTACGCGTGCGCGCACTGCCCGCGCCGCTTCACCACCTCGTCGCAGCACCGCCTGCACACGCGCCGCCATCTCAGGTGGGTGCTTGGCTGGTTGGCTGGTTGGTCATCCACACGGGGGAGAAGCCGTACGCGTGCGCGCACTGCCCGCGCCGCTTCACCACCTCGTCGCAGCACCGCCTGCACACGCGCCGCCATCTCAGGTGGGTGCTTGGCTGGTTGGCTGGTTGGTCATCCACACGGGGGAGAAGCCGTACGCGTGCGCGCACTGCCCGCGCCGCTTCACCACCTCGTCGCAGCACCGCCTGCACACGCGCCGCCATCTCAGGTGGGTGCTTGGCTGGTTGGCTGCACCGCCTGCACACGCGCCGCCATCTCAGGTGGGTGCTTGGCTGGTTGGCTGGTTGGTCATCCACACGGGCGAGAAGCCGTACGCGTGCGCGCACTGCCCGCGCCGCTTCACACCCTTCAACACCGTTGGGGCGCGCACGAAGCAGCCGCGGCGCGAGAGCACGCACGCGTGCGGCGCGTGCGGCTGGACGGGCGCGTCGCGCGCCGCGCTCGCGCAGCACGCGCGCGACGCGCACGCCGCCACCGGCCGGAAGCAAATCCAGAAACAAGAGTCGCTGTTGGTGAGCGAGCAGGCGGGCGAGGCGGGCGGGGCGGAGTCGCCGGAGCCCGAGGAGGACCGCGTCATATACGTGGCCTACGACATGGACGACGCTGACTCGCCCGCCTACCATATCCTGGACCCCGAGCAGTCAGCGGCACAAATGTTCGTTCGGCAGGCGGTGTCGGTGGACGAAGCGGTGTCTGTAGGGGAGATGGGGGAGGTGGGGCAGGCGGTGTCGGTGGGGGAGGTGGGGGCGCTGTTGGCGGGCGGCTCGCTGCTGCTGGACCGCGTGGTGGCGCTCGACCGGCCCGACCACCCCGAGATCGACGACCTCGACCCCGTGCACTACGCGCCGCACCACTTGCCCGTGACGGACGAGCAGGGCAACCCGCTGCACTTCACCATGCAGGACGGCACGCGCCTCGCCATCACCTCCGCAGACGGCAAGTCGCTGCAGGTTATAACGCAAGACGGACAGACCATTCCTGTGGAGATCAACGGATACACTGATGAAGAAGAGCTGGAGCCAGACACGGTGGTGCACCAGCTCGACATCCAGAAGGGCGGCGACGACGGCCAGCCCGTCACGCACTACTACACGCTCGTCTAA
Protein Sequence: MEVFLYNSNVCRLCGEENDNGSLLYSSEENNQNLSDIINAYLPIRVSDDGQLPRTICPGCTIQLEATVEFLNLIINGQKVIRQLHEREKEYSKSVLKSDEAEVITENIVYEINTSDGVYQVEHPISLQVAGLEKPKRKRGRPPKKPKTPEELAAEAAAKEQQAKKQTITRDKEESSGKRKRKTPTRFKEVVQGAELERIFKEEGVTDGEDSEPERRPPPREPEVIGHLEASGELVLFVKGKGRGRPKGRMRQTHEQCVICGMEFSCVGRYMSHVAQHGPVRYGCGCGQQFPKRLHYNDHQRETGHTGLTVVPCDDNDAKTKRPVAPIPVAKEPDKPEAQPAAPAAETAPAPDGAEAQPDTEAPAPEVADCPSAEPLPEGPEPPEEPEPPGPAGAEAVAPPAGKRKLKCNHCDKLFSNKQSKSLHIKAVHLGERPYVCRECGAAFAYPRSLALHAVTHRRRRARSGGYACDLCGKVLNHPSSVVYHKQAAHAAEQYVCGACGKRFRHRQLLQRHQLVHSQARPFSCKLCTATFKTKANLVNHQLLHYGVKKFSCEICKHRFAHKTSLTLHMRWHSGVKPFSCEVCGKSFSQKGNLSEHERIHTGEKPYACAHCPRRFTTSSQHRLHTRRHLRWVLGWLAGWSSTRGRSRTRARTARAASPPRRSTACTRAAISGGCLAGWLVGHPHGGEAVRVRALPAPLHHLVAAPPAHAPPSQVGAWLVGWLVIHTGEKPYACAHCPRRFTTSSQHRLHTRRHLRWVLGWLAGWSSTRARSRTRARTARAASPPRRSTACTRAAISGGCLAGWLVGHPHGGEAVRVRALPAPLHHLVAAPPAHAPPSQVGAWLVGWLVIHTGEKPYACAHCPRRFTTSSQHRLHTRRHLRWVLGWLAAPPAHAPPSQVGAWLVGWLVIHTGEKPYACAHCPRRFTPFNTVGARTKQPRRESTHACGACGWTGASRAALAQHARDAHAATGRKQIQKQESLLVSEQAGEAGGAESPEPEEDRVIYVAYDMDDADSPAYHILDPEQSAAQMFVRQAVSVDEAVSVGEMGEVGQAVSVGEVGALLAGGSLLLDRVVALDRPDHPEIDDLDPVHYAPHHLPVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITQDGQTIPVEINGYTDEEELEPDTVVHQLDIQKGGDDGQPVTHYYTLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -