Hcom009003.1
Basic Information
- Insect
- Hesperia comma
- Gene Symbol
- ZEB2
- Assembly
- GCA_905404135.1
- Location
- FR990039.1:4792385-4803386[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.52 60 5.1 0.9 2 23 240 261 239 261 0.93 2 14 1.1 1.3e+02 4.1 2.0 3 23 295 316 294 316 0.98 3 14 0.00028 0.033 15.4 3.3 1 23 359 382 359 382 0.98 4 14 4.5e-06 0.00052 21.1 4.5 1 23 386 408 386 408 0.98 5 14 0.38 43 5.6 0.1 2 23 416 436 415 436 0.88 6 14 0.0083 0.96 10.8 0.3 1 21 442 462 442 467 0.92 7 14 6.4e-05 0.0073 17.4 2.9 1 23 543 565 543 566 0.96 8 14 0.042 4.9 8.6 11.4 1 23 572 595 572 595 0.98 9 14 1.3e-05 0.0015 19.6 0.5 3 23 606 626 605 626 0.97 10 14 4.5e-05 0.0052 17.9 0.4 2 23 633 655 632 655 0.95 11 14 5.9e-06 0.00068 20.7 1.1 1 23 668 691 668 691 0.97 12 14 0.0028 0.33 12.2 4.2 1 23 697 720 697 721 0.97 13 14 3.9e-05 0.0045 18.1 0.3 3 23 732 752 731 752 0.96 14 14 4.7e-05 0.0054 17.9 1.4 3 23 760 781 758 781 0.96
Sequence Information
- Coding Sequence
- ATGGATGATTTTTGTGAAGCGGACATAAGAACACTGTGTTGTACGTGTCTGAGCGTCGATCGTAAACTATTTCAACTATGTAGAATACCGGACGGAGTTAATAATTTGTACTGGTTGCTCTCGTACGATTTAGAAGCTTATAAAGAAGGATTTTTCAAAGACTCCACAAATCTATTTATATGCTGGGAGTGTAAGGCGTTAATGTTAAGAATATGTGTATTCAGAAAACAAGTGTGCATAGCTCAGAAACAACTGTCTAGTATTGAGGAAGGCAGAATACAGATCAAAAGCCAAAAGAGTTTATCAAAGCTGTCTGTAACAAGTAAAAGTACGTACGATCATGAAATTAATTCCGTTGTAGATAAAGATGAAACCTATATTTTTATAGATTGTGGCATCGTTACTAGCAATATAAAGGTAGAAGAAGACGTTGACGATGAAGACATTCCGTTGTCCGAGTTACAAAATTATTCAGACAACGAACAAGTCAAATTAGAAGACTTTGACACTTATATAGAAAAAACTAACGACACAAAAACTAAACCTAAGACTGATGCGAGGAAGAGAAAGAGATACCCAATTAAAAGGAAACGGAAAACTGATCCTAATTTTGATGAGTATAAGCAGTATTATACAACGACAGAGATGACGGAGGAAGAAATGTTGGAGAGTAGAGAGAAAAAGAGACAGACAGCTGATTATATGGACGCGCCAAACAAATGTGAATCTTGTATAGAAGGGTATAAGAGTGAGAGTAACTTTGAAAAGCACAAGACTTTACATGTTCCGCGCCGCAAGACCTCCCAGTGCCCGATATGTCACCTATACATAAGCTCCACAGAGCTAGACGAGCACAGACACGCCCACTACGCCCGACACGGGTGTAACTACTGTTCGTTTACAACCTGCGACACGTTAGACGTGCTGCGACATCTGAAGAAGGCTCACGACATGAGAAACGTCGTCGTGCCTAAACGGTTTAAAAAGGGTGAACGAAAAACCCCGTTCACAAAGAACCCCGGGTCGCGGCCGCGGGTGAACAAGGCGATGCGAGATAAACCGACCCCGCTGGGGTACAGATGTTCCGACTGTGATAAGTACTTTGAAGACAAAAAACAAAGATGGGCTCACATACAGAAGTGCCATCGAGAAGGGTTTAAGTGTGCGACCTGCGGCAAGAGGTTCTCCTTCAAAAACCATCTGCAGAAACATGAACGCATCCACCAAGGCCCCCCCGCGCGCTCCCAATGCCCGACCTGCGGCAAGATGATCCAGGTGGCGCTACTGTCTACGCACGCGAAGTTACACGCACCACGCCCCTCGTACGACTGCGCCGCGTGCAACAAGCGCTTCGTGTCGCGCGAGTCGTACGAGGTGCACTTGAAGTACACGCTGGTGCACGCCAAGGGGGATATACTCAACGCTGCGTCTAGTGACGCCTCGCGGCGCAGCGCGGTGCAGCGCGGTGCATCGCTACGCAGCCGTGCATCGTCGGTACGCGCGGCGTACAAGATTGCCTACTTTTACGATGCACCTCTCAACATTGAGATGCGTCTCGCGGCGACGCGCGGCGCAGCTCGAAATCACTGGCCTCTTCCAGTATCGTTGCGTCGCGTCGCGTCTCGGTTCAAATGCACGATGTGTGACAAGGGCTTCCGATCTCGCCTGGAGCTGAGGGACCATGTCAACTACCACCACTTGGGGCAGACGCAGTACAAATGTCACTTGTGTCATAAGCCGTTCTCGAGCCACAAATGTTATATCTATCATGTGCGGCGCACGCATGAGGGGATCCGGGATAAGAAGGATAAAATATGCCAGCAATGTGGAAAGGCTTTTAATACCAAAAAAGGCCTTCGCGAACATGAGCGAATCCATACGGGCGAGCGCCCTCTGTCGTGCGAAATCTGCGGCGCGACGTTCAGACAGAACGCCTCGCTATATACACACAAGAAGAGAGTCCACAATATATATCCGGCCGCTAGGAAAGAGGTGCAAGTATACAAATGCGACAAATGTGAGAAAGGCTACCGCTCGCAGGGGGAGCTACAAGACCACATGAACTACAAACACATGGGCACCACGCGACACAAGTGTCCTGTCTGCGATAAGGCACTAGCGACTCGCCGCTGCATCACTCGGCACGTGCGTCGCGCTCACCACGGGATCAAAGAGAATGCGCGCGATAAAATATGTCAGCAGTGTGGGAAGGCCTTCAGAGATAAAAAAGGCCTTCGTGAACACGAACTAATCCACACCGGCGAGCGCCCTCTGGCGTGCGAGATATGCGGATGTACATTCAGACAGAGCGCCTCTCTATATACACACAGGAAACGCGTCCACAAAGTTTACCCGCAGAAGAAATCTGTAGAAATATTGGAGACTGATGTAAATCGATGA
- Protein Sequence
- MDDFCEADIRTLCCTCLSVDRKLFQLCRIPDGVNNLYWLLSYDLEAYKEGFFKDSTNLFICWECKALMLRICVFRKQVCIAQKQLSSIEEGRIQIKSQKSLSKLSVTSKSTYDHEINSVVDKDETYIFIDCGIVTSNIKVEEDVDDEDIPLSELQNYSDNEQVKLEDFDTYIEKTNDTKTKPKTDARKRKRYPIKRKRKTDPNFDEYKQYYTTTEMTEEEMLESREKKRQTADYMDAPNKCESCIEGYKSESNFEKHKTLHVPRRKTSQCPICHLYISSTELDEHRHAHYARHGCNYCSFTTCDTLDVLRHLKKAHDMRNVVVPKRFKKGERKTPFTKNPGSRPRVNKAMRDKPTPLGYRCSDCDKYFEDKKQRWAHIQKCHREGFKCATCGKRFSFKNHLQKHERIHQGPPARSQCPTCGKMIQVALLSTHAKLHAPRPSYDCAACNKRFVSRESYEVHLKYTLVHAKGDILNAASSDASRRSAVQRGASLRSRASSVRAAYKIAYFYDAPLNIEMRLAATRGAARNHWPLPVSLRRVASRFKCTMCDKGFRSRLELRDHVNYHHLGQTQYKCHLCHKPFSSHKCYIYHVRRTHEGIRDKKDKICQQCGKAFNTKKGLREHERIHTGERPLSCEICGATFRQNASLYTHKKRVHNIYPAARKEVQVYKCDKCEKGYRSQGELQDHMNYKHMGTTRHKCPVCDKALATRRCITRHVRRAHHGIKENARDKICQQCGKAFRDKKGLREHELIHTGERPLACEICGCTFRQSASLYTHRKRVHKVYPQKKSVEILETDVNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -