Hcom024161.1
Basic Information
- Insect
- Hesperia comma
- Gene Symbol
- -
- Assembly
- GCA_905404135.1
- Location
- FR990025.1:15323854-15333667[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0022 0.26 12.6 3.1 1 23 307 329 307 329 0.98 2 12 0.0012 0.14 13.4 0.9 2 20 337 355 336 359 0.90 3 12 0.09 10 7.5 0.9 1 23 363 385 363 385 0.97 4 12 3.5e-05 0.004 18.3 0.8 1 23 390 413 390 413 0.97 5 12 0.0022 0.26 12.6 0.6 1 23 417 440 417 440 0.96 6 12 0.16 19 6.7 0.1 2 20 464 482 464 484 0.93 7 12 7.2e-06 0.00083 20.4 0.1 3 23 494 514 494 514 0.98 8 12 0.015 1.7 10.0 0.0 2 23 540 562 539 562 0.94 9 12 0.00021 0.024 15.8 7.9 2 23 582 603 581 603 0.97 10 12 6.1e-05 0.007 17.5 0.2 1 20 609 628 609 631 0.93 11 12 2e-05 0.0023 19.0 2.5 1 23 637 659 637 659 0.98 12 12 6.6e-05 0.0076 17.4 1.5 1 23 665 688 665 688 0.93
Sequence Information
- Coding Sequence
- ATGGAACATTCGAGTTACTGTGTAATCTGTCTGGCAACTGATATGAAAATGATGCTCCTGAATGCTACAATGTTAGCATTTTACAAAGGATTAATATTAAATCATGTAGAATCACATGTTATTGATCCAATTTCTATTGATGATAATTTAAGCAATCAGCCTATAAAATATGATGAAGAAATCGAAATTCCTATTGATGATAATTTAAGCTATCAGCCTATAAAGTATGATGAAGAAATCGAAATTCCTATTGATGATAATTTAAGCTATCAGCTTGTAAAATATGATGAAGAAAACGAAAATCCTATTGATGATAATTTAAGCAATCAGTCTAGAAATAATGAAGAAATAAAAGCAGATATAACAATAGAATCAGCGCATGATACTGAAGATGATAATAGCACACTTAGTAATATGTTGAGCGCTCATAACAATTTAAACAATAGTGTTTCTGTTGTAAATGTTGTGAATACAAAAGAAGATAATACACAAGTTCCAAATGATAATAATGTAGAGTCAGTTTTGAAGCTAAAGTTTTTTGACAGTAACAGTGATAATGATATGAGATTTTCAAATAAAAGTCCGCTTAATACTGACAGTAAAATAATTTCAAGAACCAAAGGGAGAAAAGTTGATACTATAAAAAAGATTAACCTCAAGACGAAGACTGTAACTAAAATTATAAGGGCCTGTGATGTAGATAACAATAAAAGTAATAAACAACCTCAAAGCAAAGATAAAAAGAGAGAGACGAAAAAGAGAAGTTTAAAAGTAAAAGATAAAACAAATGAAGATGTTATGTTTTCTATAAAATCAAGTTCATTTAAGGAGAACATGACTATTGTAAAGTTGACTAAAGAGGAAGCAATAAATGAGATACTGTTAAGAAAGGAATCAGATAATTATAAAAAGAACACGCACAAGTGTGATTTGTGTTATCGAGGTTTTATTACAGAGATTACATATCAAACGCATATGAAAAAACACAGTTCGGAATTCGGAACAGTACAATGTGATATTTGTCAATTGAGGTTCAGCAAGAACCGCACTCTCAACAAGCACAAAGGAGCTTTCCATTCTAGAAAATTTGTATGCAAGAATTGCCCTTATGAATGTTTCACTCTTGGTCAAGCCAGTGGTCATATACGGTCACACAAGGGCAAGACATACACATGTAAGGAGTGTGGAGAAATATTCAGGTTTACAACCTCTCTTTCCAGTCATATACGAGCTAAACATAATAAGGAGTTCGTATGTGATTTCTGTGGCTGTACTTATGCCTCACCAGGAGGATTGGACAGTCATAAACGTTTACGTCACAGAAAGACACCAAGTACAGTGAGTTTCTCTTGTATCATCACAACTCATAACAACGAGCACCTAGGTCCGCGATGCGACGAGTGCGATGTACACTTCGCCTCTGAGCTGGCGTGGAAGAGGCACCGCGTGCTGTGCTCCAGACACCAAGTACAAAACGGGTGCGGGTTGTGTGGCGAGACGTTTGTGGACGCGAGCGCGTTACGCAAGCACGTGCGGTCGCACGGGCCGCCGAAGGCCACGTATAACATGCGCCTGTGCAAGAAGCCGCCCGCCGCCGCCGCCGACTGTACGCCGCTGCCGTGCGCCTATTGTGACGCGGAGCTAGGCGACAAGAAGGAGTACAAGCGGCATATGGCGAGCGCGCACCCCGAGCGGGACAGGGCGTGGCCCCCGCCGGGGTCGCCCGCCACCCCGCGGCCGCTGGTGTGCGAGTTTTGCGGGAAGGTGTTTAAGCATCACTCTCATTTCGCCATCCACCATCGTAGTCACACGGGCGAAAAGCCGTTCCAATGTCCGGATTGTGGCAAGCGGTTCAAGAGCGCGGTCGCCGTCAGGATGCACCGTCCACTGCACACCAACCAGCTCCAACACAAGTGCCACCTGTGCGAGAAGGCCTTCCCTGACGTTGGGAAGCTTAATAGACACATCAAGAGCCATTCGGATGTCCGTCCCTTCAAGTGCCCGTACTGCGACAAAGCCTTCACGTACCAATACCTAACGAATACTCATGTGACTTACGTGCACTCTAAGGAACCGTATCCCAAGAGGGACAGAAGTAAGAGACCTGGTAAAGCCAAGAAGTGA
- Protein Sequence
- MEHSSYCVICLATDMKMMLLNATMLAFYKGLILNHVESHVIDPISIDDNLSNQPIKYDEEIEIPIDDNLSYQPIKYDEEIEIPIDDNLSYQLVKYDEENENPIDDNLSNQSRNNEEIKADITIESAHDTEDDNSTLSNMLSAHNNLNNSVSVVNVVNTKEDNTQVPNDNNVESVLKLKFFDSNSDNDMRFSNKSPLNTDSKIISRTKGRKVDTIKKINLKTKTVTKIIRACDVDNNKSNKQPQSKDKKRETKKRSLKVKDKTNEDVMFSIKSSSFKENMTIVKLTKEEAINEILLRKESDNYKKNTHKCDLCYRGFITEITYQTHMKKHSSEFGTVQCDICQLRFSKNRTLNKHKGAFHSRKFVCKNCPYECFTLGQASGHIRSHKGKTYTCKECGEIFRFTTSLSSHIRAKHNKEFVCDFCGCTYASPGGLDSHKRLRHRKTPSTVSFSCIITTHNNEHLGPRCDECDVHFASELAWKRHRVLCSRHQVQNGCGLCGETFVDASALRKHVRSHGPPKATYNMRLCKKPPAAAADCTPLPCAYCDAELGDKKEYKRHMASAHPERDRAWPPPGSPATPRPLVCEFCGKVFKHHSHFAIHHRSHTGEKPFQCPDCGKRFKSAVAVRMHRPLHTNQLQHKCHLCEKAFPDVGKLNRHIKSHSDVRPFKCPYCDKAFTYQYLTNTHVTYVHSKEPYPKRDRSKRPGKAKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -