Hcom029768.1
Basic Information
- Insect
- Hesperia comma
- Gene Symbol
- -
- Assembly
- GCA_905404135.1
- Location
- FR990024.1:1812142-1818001[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0049 0.56 11.5 1.2 3 23 34 54 33 54 0.99 2 17 0.00015 0.017 16.3 2.5 1 23 91 114 91 114 0.97 3 17 0.00022 0.026 15.7 0.6 1 23 116 138 116 138 0.98 4 17 3.6 4.1e+02 2.5 0.7 1 23 146 168 146 168 0.95 5 17 0.039 4.5 8.7 0.1 1 23 173 195 173 195 0.98 6 17 0.035 4 8.8 3.1 1 19 252 270 252 274 0.90 7 17 7e-05 0.008 17.3 0.0 1 20 280 299 280 300 0.96 8 17 0.054 6.3 8.2 0.1 1 23 315 338 315 338 0.95 9 17 0.0003 0.034 15.3 0.3 2 23 345 368 344 368 0.95 10 17 0.051 5.8 8.3 2.2 3 23 376 396 375 396 0.97 11 17 0.083 9.5 7.6 0.6 1 23 401 423 401 423 0.97 12 17 1.7e-05 0.0019 19.3 2.2 3 23 431 451 429 451 0.96 13 17 0.00088 0.1 13.9 3.1 1 23 503 526 503 527 0.93 14 17 2e-05 0.0023 19.0 1.8 1 23 597 620 597 620 0.97 15 17 0.00024 0.028 15.6 2.1 1 23 679 702 679 702 0.97 16 17 4.1e-05 0.0047 18.0 4.1 1 23 770 793 770 793 0.98 17 17 0.095 11 7.5 5.8 1 23 855 878 855 878 0.96
Sequence Information
- Coding Sequence
- ATGGCTTCACTCACCAGTCTACACCAAAACATAAAGCAAAGCTCAATAGATTGCAACGGACCGAAACAAACAACAATCGATTTGGTTGGCGGCATACTCTGCAACATTTGCCGGCTGACGTTCGCCACGAAACAAAGCTACGACAGCCACTACCGCAGCCACGGCGCTTCGACGGAGATCATTTACACTTGCAACATTTGTTATAAGGAGATAGCTGGCTATCCAAGCTTCCGTGGTCATTGTTATACAAGTCACGTAATTAAGGAACGATTCCAATGTGAACACTGCTTGAAACAATTTTCAAAAATCAGTAACCTGAAAGACCATGTTAACAGAATTCATAAATTCAAATGCCCTACGTGCAGAAAAGAGTTCCCCAGTAAGAAAGAGATGCTGCTACACCAGATCATTCATAACAACATGGACCAGCCTCCATATAACTGCAATACTTGTAAAATTGAAATTGACACCGCCGATGAGTGCAAGGAGCACATAGAGAAGCACCTGAAATTCCTGTACTCCTGTCCCATTTGCAACGACAACATATCGGACAGAGAAAATGCTGCGGATCACATGAAAAAACATTTCGGCAACGTACTTAGCGAAGACACAAATAACGAGACCCCTAAATCATCAGAAGACCCATCCGAAGAATTCAGCGGTATAATGTGCCAGTTCTGTTCCCTCATCCTCGGGGACAGAGTAAAATTTGATGCTCATTTCTCTTGCAAACACGGCGACGAGGACATAGTTTACATGTGCGTGGAGTGTGGGAAGAGCTTTGAAAAATATTCCGTATTCAAGAATCATTGCAACGATCATACTTTGAGGAATAGATACAAGTGCGAGATCTGCAAGAAAGCGTTCCCGCGGCTGTCAATGCTGGCGGCGCACACGGCGGCGTGCCAGGCGGCGGGCGCGGGCGCGGCGCGCGGCAAGGTGTTCGCGTGTCCGACGTGCGCGCGCCGCTTCGCCAGCATGGGCCGCTGGCGCGAGCACCTGCGGCTCGCGCACGCGATCACCGACCAGCTGCCGTGTCCGCACGAGGGCTGCGAGCGCACTTTTGACACTCCGAAACAGCTGATTCTTCATCAACAATCGCACGAGATTACCAATCAGAACTTTTGCAGTCAATGCAGGCTTGTCTTTTCGAATGCGTCTTCTTGCGAGCGTCATTTAGAAATGCACAAAAAAAAGATATACTTTTGCCCCATATGCAAGCGAAATGCGAAAGATAAAAAAGTTATAATGAATCACATATCGAAACACTTCGACGTCATTTCCCATCTCTGTCGGATTTGTGGTAAAATTTTTAATACTAAAAAGAGTTTGATTGAACACTTGAAGACGCATAAGAAGGCGGTAGGTATTGGGAATGAAGCATCTCTAATATTAACAGCAACTGAAAACGAACATGAGAAAACTCAGGATATTCAAAAGGAACATGCTGAACAAAGTCCAATTGCAGATGAACAAAATTCAAACACACTTTCTCACGACAAACCTCATAAGTGTCCTATATGTGAAAAAACATTTGCAAAATATTCGTACATGAGCAAACATGTAGGCAGAGTACACCACATCAGGAGTATTGACATAAAAAATCTCATTATAGATCATAAAGATAGTGCCGATGATGAGGCCTCTGCTATAGAGACAATGGTGAGTGAAGAAAATGAAACATCTATAGATGGAAAAGGTGATAGTGATGAACAAGTTTCCAATTCTGAAAAAATCAAAATTCAGATAAGCTCAAATATAGAATATCTCCTTGATGGCTCCAAGCCCCACAAATGTCCTATTTGTGATAAGTCTTTTGCAAAGTATCCCTACATGACTAAACATGTTCGTAAAGTACATAACAAAAAAGGCATTGATATTAAAAATTCGATTACTGACCACAAAATGCTTGTTGCTAATGAGAATTCTGCAATGGAAACAGGAGTCGATGAAGAAAATGACACGTCAGTTGATATTTCAAAAGAAATTAATGACCAAGTAACAAATCACGAAAATCAAAATATTGATAAACCCCATAAATGTCCATTATGCGAAAAATCTTTTGCAAAGTATCCATATATGACTAAACATGTTCGTAAAGTTCACAACAAAAAGATCATCGATATTAAAAACGCTGTTAATGAGCACAAGGAGGGTGTCGATGGAGAGGTCTCTGCAATGGACACATCTATTGATGGAGAATGTGACATATCTGTAGATAACATAAAAGATGATAATATTGTCCAATTTCTGAATACAGATAAAATGTCAAATGTAGAAAATCTCACGAATATCGAATCCAAACCATTTAAATGTTCTACATGTGATAAATCATTTGCAAAACATTCTTACATGAGTAAACATGTCCGTACAGTACACAACAAGAAGAGTATTGATATTAAAAATCTGATTGGCGAACATAAAGAAAGTATTGAGGACGACGGATCTGCAATGGAAACAGTGGGCGATGAAGATAATGATATATTTACAGATAATTCAAAAGATGACAATGATGATCGACTTTCGACTACAGATCATCAAATGGATGCCAGCTATAAACCTTATAAATGCCCAATGTGCGAAAAATCATTTGCAAAAGACTGCTATTGTAGGAAGCATGTCCGTAGAGTACACTATAAGAAGGGGATGGACATCATGAGTCCAATCTTTGATCCTACCCAGAGTTCCTCAATAGGAACATTGATCGAAAATGAAAATCATTTAGTTGAATCACAAGACTATTTGAAAAACGAAATTTCCAATTTACAATCAATTGCTAACATTGTTAACGAGACGGAAACTACCGATTGTCTTAACGATATTGATGATGCTAATGCTAGTATAGACTTCGCAAATGTTAAGTTGGAAAACTACATTTTTAGTGTACAAAGAGAAAGCCCAATGGATATTGTTCCTTCATTGCCAGATGGAAAATATTTGCTCAATGGTAATAACGATGGAAACGTTGCTATTAATAAAGATTTATTCAAGGATAATAACGAAGATCATTCTTCCATTCCAAAAGATATAATATACGAGAAAGTAAATGTACCAATTGGAACAGAACTTGTCAATGAAAATGGTGAGGCTATCGCTCTAGTTGAAAAAGATTTGTTCAATGCCAATAGTAAGGAAAGTGCTACAGTTGGAAAAGTTTTGTTTAGTGATAGTAACGAGCAAAATGATAATCCCATTGACATTCTGGAATACATCGCGGAAATGCCTGAGAATAATTCATTATTTGTTCCTGTGATGAACCAAGCGGCGGCGGTTGAGGCGGTGTCGTTCCCGTGCGAGTACGGGCCGGAGTTCAGCTTGGACGCCGCCAGCGCGCCCGGCTTCATCGACCTGGACGACCACATGCTGCCCCACATCGACCCGCTGCTCACCATCAACCAGACCGCCCCGACCGCCCCGACCGAGTACAACTACGACTACAGCGTCATCGACGCCGCGGACCTCCTCGCGCTGGGCACCGAGGCCGAGCGGCCCTACGACCAGTACAACGTGGCCCTCGCCGCCGCCGCCTACCAGCCCCCCTGGGACCCGCCCGTCATCACCAAACTCGGCGATCAATACGCCTACGGCTACGGCGAGATGCCCGAGGCCAGTCGGGTCCCCATAATGAACACGGATATATTTTGA
- Protein Sequence
- MASLTSLHQNIKQSSIDCNGPKQTTIDLVGGILCNICRLTFATKQSYDSHYRSHGASTEIIYTCNICYKEIAGYPSFRGHCYTSHVIKERFQCEHCLKQFSKISNLKDHVNRIHKFKCPTCRKEFPSKKEMLLHQIIHNNMDQPPYNCNTCKIEIDTADECKEHIEKHLKFLYSCPICNDNISDRENAADHMKKHFGNVLSEDTNNETPKSSEDPSEEFSGIMCQFCSLILGDRVKFDAHFSCKHGDEDIVYMCVECGKSFEKYSVFKNHCNDHTLRNRYKCEICKKAFPRLSMLAAHTAACQAAGAGAARGKVFACPTCARRFASMGRWREHLRLAHAITDQLPCPHEGCERTFDTPKQLILHQQSHEITNQNFCSQCRLVFSNASSCERHLEMHKKKIYFCPICKRNAKDKKVIMNHISKHFDVISHLCRICGKIFNTKKSLIEHLKTHKKAVGIGNEASLILTATENEHEKTQDIQKEHAEQSPIADEQNSNTLSHDKPHKCPICEKTFAKYSYMSKHVGRVHHIRSIDIKNLIIDHKDSADDEASAIETMVSEENETSIDGKGDSDEQVSNSEKIKIQISSNIEYLLDGSKPHKCPICDKSFAKYPYMTKHVRKVHNKKGIDIKNSITDHKMLVANENSAMETGVDEENDTSVDISKEINDQVTNHENQNIDKPHKCPLCEKSFAKYPYMTKHVRKVHNKKIIDIKNAVNEHKEGVDGEVSAMDTSIDGECDISVDNIKDDNIVQFLNTDKMSNVENLTNIESKPFKCSTCDKSFAKHSYMSKHVRTVHNKKSIDIKNLIGEHKESIEDDGSAMETVGDEDNDIFTDNSKDDNDDRLSTTDHQMDASYKPYKCPMCEKSFAKDCYCRKHVRRVHYKKGMDIMSPIFDPTQSSSIGTLIENENHLVESQDYLKNEISNLQSIANIVNETETTDCLNDIDDANASIDFANVKLENYIFSVQRESPMDIVPSLPDGKYLLNGNNDGNVAINKDLFKDNNEDHSSIPKDIIYEKVNVPIGTELVNENGEAIALVEKDLFNANSKESATVGKVLFSDSNEQNDNPIDILEYIAEMPENNSLFVPVMNQAAAVEAVSFPCEYGPEFSLDAASAPGFIDLDDHMLPHIDPLLTINQTAPTAPTEYNYDYSVIDAADLLALGTEAERPYDQYNVALAAAAYQPPWDPPVITKLGDQYAYGYGEMPEASRVPIMNTDIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -