Basic Information

Insect: Hesperia comma
Gene Symbol: -
Assembly: GCA_905404135.1
Location: FR990032.1:827863-832745[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.8e-05 0.0078 17.4 1.6 1 23 196 219 196 219 0.92

2 13 0.0033 0.38 12.0 3.0 1 23 223 245 223 245 0.99

3 13 2.5e-06 0.00028 21.9 4.5 1 23 251 273 251 273 0.99

4 13 7.6e-06 0.00088 20.3 4.1 1 23 279 301 279 301 0.98

5 13 1.7e-06 0.0002 22.4 2.9 2 23 309 331 308 331 0.96

6 13 0.00059 0.068 14.4 3.4 1 23 337 359 337 359 0.95

7 13 0.00055 0.063 14.5 1.3 1 23 365 388 365 388 0.97

8 13 0.013 1.5 10.1 0.4 1 23 400 422 400 422 0.98

9 13 0.0056 0.65 11.3 6.6 1 23 428 450 428 450 0.98

10 13 1.8e-05 0.0021 19.1 1.2 1 23 456 479 456 479 0.94

11 13 0.06 6.9 8.1 0.9 2 23 495 513 494 513 0.76

12 13 0.00069 0.08 14.2 0.7 1 23 518 541 518 541 0.96

13 13 0.0017 0.19 13.0 3.6 1 23 547 570 547 570 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.8e-05	0.0078	17.4	1.6	1	23	196	219	196	219	0.92
2	13	0.0033	0.38	12.0	3.0	1	23	223	245	223	245	0.99
3	13	2.5e-06	0.00028	21.9	4.5	1	23	251	273	251	273	0.99
4	13	7.6e-06	0.00088	20.3	4.1	1	23	279	301	279	301	0.98
5	13	1.7e-06	0.0002	22.4	2.9	2	23	309	331	308	331	0.96
6	13	0.00059	0.068	14.4	3.4	1	23	337	359	337	359	0.95
7	13	0.00055	0.063	14.5	1.3	1	23	365	388	365	388	0.97
8	13	0.013	1.5	10.1	0.4	1	23	400	422	400	422	0.98
9	13	0.0056	0.65	11.3	6.6	1	23	428	450	428	450	0.98
10	13	1.8e-05	0.0021	19.1	1.2	1	23	456	479	456	479	0.94
11	13	0.06	6.9	8.1	0.9	2	23	495	513	494	513	0.76
12	13	0.00069	0.08	14.2	0.7	1	23	518	541	518	541	0.96
13	13	0.0017	0.19	13.0	3.6	1	23	547	570	547	570	0.96

Sequence Information

Coding Sequence: ATGTCAGAAATATTTAACTTACATACGCTCTGCCGCTGCTGTCATAGCGATGGTAGCTTCAAAAGTCTTCAGCTATCTTACGCATACGACAATCGCGTAGAAGTGTACTCCACAATGTTGAAAGAGACCTTAGATGTAACGATCAGCCCACCCCCGTTTGAAGCAAGCTATGCCATCTGTGACTGTTGCATCATCAAGCTCCGAGAAGCTGCACATTTCAAGCAGCAAGTGTTAGACTGTGAGCTAAAGTTTGAAGAATACTGTAAAAATGAACAGGCATTGACAGTGAAAGAAGAAATAGATTATGATGACAGTGCTGACTATGACTTGGGCAGTCACAGTAAAGACATAGATGTGTCTGACGATGAAGGAGAACAACATGAAAAAAGTGAAGATGAAAAATGTGATGTAAAAATCAATAAAATCAAAGGCCCTGGGGTTAGTGCCCTGCACGAGGATGTTGGTGAAAAATTTAGTTTAAAAGTAAAAGAAGAAGATGGTCAAGGTAGGGTTAGAACAAAACAGGCTAGCTGTTTAGTGGACCCCGAGCTGGAAACATATGTAAAGACTGAAGATGGAGATACCTTTATATGTAAAAAGTGTGACAAGAAGTTTAAACTGCTTAAATTGTTGCGACGTCATATTGTTCTCTCACACAAGGATGCTTATAAGTGTCAAAATTGTTCTCTACAATTTTCTGGGAGGCAAAAATACCTGCAACATATGAAAAGTCATGCTAGCAGTGAATCATTCAAATGTGACTTCTGTGAAAAATCCTTCCGTCAAAGACATACGTTGCGCGATCATATGAACGTTCACATGAAAACCAACCCATATCAATGTGATATATGCCACAAATTTTTCAATTACAAACAGACATTGAAAAAACACATTCTATGGCATTACAATGCGTTGAGAAAATGCATGTGTGACATATGCGGACACCGATTCAATGACAAGACCAACCTCAACATACATATTAGAACAGTGCACGAGAAGCAGAGACCTTTCAAGTGTCCTCTGTGTGCGAAAACGTTCACAGCAAAGAAACATCTGAAGGATCATTCGTATAGTCACACAGGAGAAAGGCCTTACAAATGCGAAGTGTGCGGCGATGGGTTCACAACATCGTGGAAGTTAAAATACCATCAGTACAGATATCATCCCAACTCCCACCCCGGTCAGACGAAGAAGATTTACACCTGCAAGGTTTGTTACCAGGAGCTGGAAACTCGAGGGAAGTTCATGGCCCATGTGAGAGGACACGTTGGACATAAGAAGTATAAATGCCACTTGTGCGTGAAGGATTTTACGTGTAAATATTCTCTGAACCGCCATATTAGCTCGCACAGTGGTGCCAAGCCATACAACTGTGATCTGTGCGACAAGAAATACACCCAAAAGGCGCTGCTGCGCCGCCACAAGTTGCAAATCCACGACCCAAACAGCTTACACTACCCGGGCCGGGTCGTAGAACTAGTCAAATGTGATTTGTGTAATAAGAGTTTTAAGGATATAAAGAGGCATATGGTGTCACACAAGTCAAGACCACACGTTTGTGAATTTTGTTTGAAGTCCTATCCCGAGAAGAACACCTTGAATAGGCACATACTGGTCGTCCACCAAGGATTCAAACGGCATCCTTGCACACTCTGTAATAAGAAATATACTAGATTTCTTGGATTACAAAAGCATACAAAGAGAGTCCATAAGTTGGAATTGAAAAAGGAAGTAGAAGAGTCTTGA
Protein Sequence: MSEIFNLHTLCRCCHSDGSFKSLQLSYAYDNRVEVYSTMLKETLDVTISPPPFEASYAICDCCIIKLREAAHFKQQVLDCELKFEEYCKNEQALTVKEEIDYDDSADYDLGSHSKDIDVSDDEGEQHEKSEDEKCDVKINKIKGPGVSALHEDVGEKFSLKVKEEDGQGRVRTKQASCLVDPELETYVKTEDGDTFICKKCDKKFKLLKLLRRHIVLSHKDAYKCQNCSLQFSGRQKYLQHMKSHASSESFKCDFCEKSFRQRHTLRDHMNVHMKTNPYQCDICHKFFNYKQTLKKHILWHYNALRKCMCDICGHRFNDKTNLNIHIRTVHEKQRPFKCPLCAKTFTAKKHLKDHSYSHTGERPYKCEVCGDGFTTSWKLKYHQYRYHPNSHPGQTKKIYTCKVCYQELETRGKFMAHVRGHVGHKKYKCHLCVKDFTCKYSLNRHISSHSGAKPYNCDLCDKKYTQKALLRRHKLQIHDPNSLHYPGRVVELVKCDLCNKSFKDIKRHMVSHKSRPHVCEFCLKSYPEKNTLNRHILVVHQGFKRHPCTLCNKKYTRFLGLQKHTKRVHKLELKKEVEES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -