Hcom027504.1
Basic Information
- Insect
- Hesperia comma
- Gene Symbol
- -
- Assembly
- GCA_905404135.1
- Location
- FR990015.1:14782600-14790380[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00023 0.026 15.7 5.0 2 21 167 186 166 187 0.94 2 20 0.67 77 4.8 1.6 1 23 220 243 220 243 0.93 3 20 0.00018 0.021 16.0 2.6 2 23 249 270 248 270 0.95 4 20 0.11 13 7.3 2.5 2 21 274 293 273 294 0.92 5 20 0.0057 0.66 11.3 0.4 2 23 338 360 337 360 0.93 6 20 5.1 5.9e+02 2.0 0.2 3 23 368 387 367 387 0.87 7 20 0.0011 0.13 13.6 0.8 1 23 393 415 393 415 0.98 8 20 0.00054 0.063 14.5 1.5 1 23 421 444 421 444 0.97 9 20 0.021 2.4 9.5 0.2 1 23 453 476 453 476 0.89 10 20 0.00051 0.059 14.6 2.3 1 23 488 510 488 510 0.98 11 20 0.0014 0.16 13.2 3.9 2 21 620 639 619 640 0.93 12 20 4.2e-05 0.0049 18.0 1.1 2 21 776 795 775 796 0.94 13 20 0.00021 0.024 15.8 0.7 2 23 830 852 829 852 0.95 14 20 6.7e-05 0.0077 17.4 0.5 2 23 858 879 857 879 0.96 15 20 0.42 49 5.4 1.9 2 21 883 902 883 903 0.92 16 20 1.9e-05 0.0022 19.1 0.6 1 23 929 952 929 952 0.93 17 20 0.003 0.35 12.2 0.5 1 23 958 980 958 980 0.95 18 20 0.071 8.2 7.8 0.1 1 23 986 1008 986 1008 0.97 19 20 0.0027 0.31 12.3 0.6 1 23 1014 1037 1014 1037 0.94 20 20 0.0043 0.5 11.7 2.2 2 23 1044 1066 1043 1066 0.92
Sequence Information
- Coding Sequence
- ATGACACGCCAAGTTGTTAATATTAAAGCCCTAGTTTCGCACGTCGTAAAAGGAGATGGAATTAACAAATGCAGAATTTGTATGGGTGATACCTCTGAAGGACAAGTCTATTTGGGTGATACAGTAATGATGGATGGTGATAAACCAATAACTCTATCGGAATTGCTTGAAGTCATAACGGGAGTTGAGGTGCAGCTGGAGGACGGCATCCCAGCTGGCCTGTGCACTACCTGCTCCACGTCAGCCTTGAACGCTGCCCACTTTCGAATGTTTTGCAGACAGGCTTTGGAGCAATGGGAGACGACGCTGCTACTCTTGGCAAACTTACGCTCCGTACCTGTGAATGCAAAAAAAGCTTTACTCATTATACTAGGTCAGAATAAAATAACAATAGTCGATAGATATCCAGGTCGAGAACAAACGTCAGATTCAGAAAAAGCGGAATCGAAAGTCCGGTCAAAGTTACTTAAAAGGGAAAAGAGAATAGTTAAAGGGTGCCAATGCTCTGATTGTGGGAAGAAATTTAAATATCCACAACACTTGCACCAGCATTTAAAAGAGTCCACGGATTTCAAACGTGCATGCCATATTTGCGCCAAAATTATGACCAGGGATGACTTAATATTCCATATGAAAGAAGAGCATGGTAGGAAGCCTTATGACTGCAAGAAATGCCCAGCGTTGCTACATTCTTATAGTCAATTCAAACGACATGTAGTCAAAGCGCATTCTAAAGGTTCCTGTTTCTGTGGAGACTGTGGCAGAAGCTTTAAATCTCCACAAGCATTTCATGCCCATCAGTCGGTTCACAGGCTCAAGACTTGTCCAAGATGTGATAAACTCTTTCGCAATCAAACCTGTTACTTATATCATGTTAAAAGTTGTTGTAATCTCGACAGTAGCAGACAGGATACGTACCGTACAAAGCATAAAGTCTTTGTGGAAGTTGAAAACCGAACTAGCGATAAAAAAATAAAAGTTGGACTCCGCGGTAGCGCGGACAAGCAATGTATTTGTGACTATTGCGGAAAAAAATTCGCCGGGAAGAAGTTCGTCGGAGCCCATATTCAAATCGTTCATATGAAAAACACTCATAAACCTTGCGTATACTGTGGGAAACTCCTAGCCGCTGCTCACATGACTGAGCACGTAAAAACGCATGAAATGGTCAGAATCTTCACGTGTGAACATTGTGGCATCGTTTTGAGGACGAAACTTGGATACATTCAGCATCTACGTTTGCACACGGGAGAGAAACCATATAAATGTCAGTATTGTGGAGAAACATTCTCTGCATCATCTCGGAAATCAGAACACATCAGGAAGAACCACAAGACTTCGGAAATTGAATTGAAACACGCTTGCGAATTGTGTCCTGCTCGATTTCGTCTTCCTTACAGATTAAAAAGGCATGTTGCTGCTATCCATAATTCAGAGCCAGAGGATAAGCCGAAATTACTGTTCGAATGTGAAGATTGTACCGAAAAATTTACTTCGTACAGAGGCCTGTTGCACCATGGTCGAAAACATCAGGGTCAATTTAAGGTGTGGGAGGAGACTGGATTGCCGCGAGGAACATGCCGCGAATGTTATCAGGCAGCTGTCGCAGCCATCACCTTCAGGAAACTGGTCTGGGAGTCAACGCGACAGTGGTCCTCAGCTGTAACCACGCTCATAAACATTCCAAATTCTAATAACGATGGAGCATACTACATTTATTACGGAGAAACTACCACCATGATACAGGACCCGGAAAAGAGAATCTCCGACGTCTCCCAAGCGGTCAGGAGACTTAATTGTGGAGGTAGCCAGAAACTACGAAAACTTCGAAGAAAGTTCAACAGCTCGACTATGTTAAAATGTCGCGATTGTCATATGAAGTTCCCAACATCATACCACTTGAACAAACATTTCAAAAGTTCAATGCTCCGTGTTTGCACGGAGTGTTCTGTGATAATGCGAAAAGAGAAACTAGCGAATCATTTGCTCAAGGCGCACAATAAAAAGGTTAAAGAAGAGACATCATTTCCTCGAGGACTGTGCACCAATTGCACGTCTAATGCAGTCTCCGCCTTCGAATTCAAATTTTTCGTTCAGAAATCTCACGTACTCTGGACTACTTGTCTCGACACCCTAACAGCACTGCCTGGAGCTCAAAACTCTAAGTCCTTATACGCTATTGTCGGGGAAGACTTGTCGCTGCAAACTGTGGCTGAGTTTACTGGAGATGCCAAAGTTTTGCTTGGTCTGCTACTAAACAAATTCAAGAAAAGGCAAAAAACTGAAGCCAAGACGAAAAATAAAGGGCGCTCGGGTCCGCCCTGCAAGTGCACAGATTGTGGGAAATCCTATCCCAGTCCGTACTATCTGAATTTGCACTTGAAAAACAGTAGTCAAAAGGAGGCCTGTTGGTTTTGTGGTGTTGTGCATACGAGAGGAAAAGAAATGAAAGATCACCTTTTGAAAAAGCACTTCTTAGAAGCCCTCTCTTGTCCTGATTGCCCAAAGCTTTTCACTCAGGAATTAGAACTACAACTACACATTAGAAACTGTCATAAACCGGGGTCTTTGACTTGTGGCGATTGCGGAAGATCATTTCCAAGGCACGCATCGTTTGAGGCGCATTCACAAATGCACGCGGTGAGAACTTGCCGCGCTTGTGGCACTCAATTCACCAGCCGCGGATGTTACAGAGAGCATAGGAAGTTATGCGAACCAGACGCAAAGCCAGACGTCAAAAAGATGCCGGCGAGCAAACGATCTAATGTCCGAGACCCGTCAACATATACTTGCGATTACTGCTCAAAGACATATCGTTCGCGACCTCAGCTGAAGAATCACATTGTATGGATTCACATGGACGTCCGTCCGCACCAGTGTCAATGGTGCGGAAAGAGATATTTCACGCCGGCTCGTCTAGCGGAACATACAGTGGTTCATACACGAGAAAGGAACTTCGAATGTGACATTTGTGGGGCGAAGTTAGTTTCCAAAATGGCTGCAGTGTACCATAGACGTAGACATACCGGGGAGAGACCATATGAGTGTGAAGACTGTGGGGAAAAGTTTATATCTTCCTCTCGAAGATCTGAACATGCGAAACGTAGGCATGGGAAGGGTTTGCGTGTGCAATGTATTTATTGTCATGCTACTTTCGTAAGAAGGCACGAACTACGAAGGCATGTAGAGAAAGCGCATAGTTAG
- Protein Sequence
- MTRQVVNIKALVSHVVKGDGINKCRICMGDTSEGQVYLGDTVMMDGDKPITLSELLEVITGVEVQLEDGIPAGLCTTCSTSALNAAHFRMFCRQALEQWETTLLLLANLRSVPVNAKKALLIILGQNKITIVDRYPGREQTSDSEKAESKVRSKLLKREKRIVKGCQCSDCGKKFKYPQHLHQHLKESTDFKRACHICAKIMTRDDLIFHMKEEHGRKPYDCKKCPALLHSYSQFKRHVVKAHSKGSCFCGDCGRSFKSPQAFHAHQSVHRLKTCPRCDKLFRNQTCYLYHVKSCCNLDSSRQDTYRTKHKVFVEVENRTSDKKIKVGLRGSADKQCICDYCGKKFAGKKFVGAHIQIVHMKNTHKPCVYCGKLLAAAHMTEHVKTHEMVRIFTCEHCGIVLRTKLGYIQHLRLHTGEKPYKCQYCGETFSASSRKSEHIRKNHKTSEIELKHACELCPARFRLPYRLKRHVAAIHNSEPEDKPKLLFECEDCTEKFTSYRGLLHHGRKHQGQFKVWEETGLPRGTCRECYQAAVAAITFRKLVWESTRQWSSAVTTLINIPNSNNDGAYYIYYGETTTMIQDPEKRISDVSQAVRRLNCGGSQKLRKLRRKFNSSTMLKCRDCHMKFPTSYHLNKHFKSSMLRVCTECSVIMRKEKLANHLLKAHNKKVKEETSFPRGLCTNCTSNAVSAFEFKFFVQKSHVLWTTCLDTLTALPGAQNSKSLYAIVGEDLSLQTVAEFTGDAKVLLGLLLNKFKKRQKTEAKTKNKGRSGPPCKCTDCGKSYPSPYYLNLHLKNSSQKEACWFCGVVHTRGKEMKDHLLKKHFLEALSCPDCPKLFTQELELQLHIRNCHKPGSLTCGDCGRSFPRHASFEAHSQMHAVRTCRACGTQFTSRGCYREHRKLCEPDAKPDVKKMPASKRSNVRDPSTYTCDYCSKTYRSRPQLKNHIVWIHMDVRPHQCQWCGKRYFTPARLAEHTVVHTRERNFECDICGAKLVSKMAAVYHRRRHTGERPYECEDCGEKFISSSRRSEHAKRRHGKGLRVQCIYCHATFVRRHELRRHVEKAHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -