Hcom008649.1
Basic Information
- Insect
- Hesperia comma
- Gene Symbol
- SCRT1
- Assembly
- GCA_905404135.1
- Location
- FR990039.1:568502-574492[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.62 71 4.9 0.5 8 23 44 59 37 59 0.90 2 17 0.0012 0.14 13.4 2.6 1 22 65 86 65 90 0.93 3 17 0.0056 0.64 11.3 1.5 1 23 98 121 98 121 0.92 4 17 0.00066 0.076 14.2 0.0 1 23 127 150 127 150 0.98 5 17 0.0055 0.63 11.3 0.2 1 21 159 179 159 180 0.89 6 17 0.015 1.8 10.0 0.4 1 21 250 270 250 271 0.85 7 17 6.7e-06 0.00077 20.5 0.7 1 23 341 363 341 363 0.98 8 17 0.00059 0.068 14.4 0.2 3 23 371 392 369 392 0.93 9 17 0.00059 0.068 14.4 0.7 3 23 531 552 529 552 0.93 10 17 0.00059 0.068 14.4 0.7 3 23 569 590 567 590 0.93 11 17 0.00059 0.068 14.4 0.7 3 23 607 628 605 628 0.93 12 17 0.00059 0.068 14.4 0.7 3 23 689 710 687 710 0.93 13 17 0.00059 0.068 14.4 0.7 3 23 747 768 745 768 0.93 14 17 0.00059 0.068 14.4 0.7 3 23 789 810 787 810 0.93 15 17 0.00059 0.068 14.4 0.7 3 23 827 848 825 848 0.93 16 17 0.00059 0.068 14.4 0.7 3 23 865 886 863 886 0.93 17 17 0.00059 0.068 14.4 0.7 3 23 925 946 923 946 0.93
Sequence Information
- Coding Sequence
- ATGTGGTACCGGTATCAATACCGGTTTCCGCACGCGCAACCAGATGAAGCACCACCAGCTGCGGCACTCGGACGCCAGGGACTACTACTGCGTCGAGTGCGACGTCAGGTATGTGGTACCGGTATCAATACCGGTTTCCGCACGCGCAACCAGATGAAGCACCACCAGCTGCGGCACTCGGACGCCAGGGACTACTACTGCGTCAAGTGCGACGTCAGATTCAAGTCGGCGCACACCCTCCGACAGCATCTACAGAAGAGCTTGAAACACAAGGACACGCAGAGCCTCAAGTTCCCGTGCGAGCGATGCGACAAACGATTCGAGACGGAAAGCGCACGGCGCCACCACGAAACGGTGCAGCATGATGGTGTACGGGCGTACAGATGCCCGCAGTGCCCGGCGGCGCTGGCGACGGCCAACTCGCTGGCGAAGCACACGCGCGTGGTGCACGCCGGCCGGCGCCCGCCCGCGCGCCACGTGTGCGACACCTGCGGCAAGGTGTTCCGGGTGAGTGCGGGCAGACAAACACACGCACAGACAGACACACTGCGGACACAGCGTGGTGCCCCGCGCGCCACGTGTGCGACACCTGCGGCAAGGTGTTCCGGACAGACACACTGCGGACACAGCGTGGTGCCCCGCGCGCCACGTGTGCGACACCTGCGGCAAGGTGTTCCGGGTGAGTGCGGGCAGACACACACACGCACAGACAGACACACTGCGGACACAGCGTGGTGCCCCGCGCGCCACGTGTGCGACACCTGCGGCAAGGTGTTCCGGGTGAGTGCGGGCAGACACACACACGCACAGACAGACACACTGCGGACACAGCGTGGTGCCCCGCGCGCCACGTGTGCGACACCTGCGGCAAGGTGTTCCGGACAGACACACTGCGGACACAGCGTGGTGCCCCGCGCGCCACGTGTGCGACACCTGCGGCAAGGTGTTCCGGGTGAGTGCGGGCAGACATACACACGCACAGACAGACATACTGCGGACACAGCGTGGTGCCCCGCGCGCCACGTGTGCGACACCTGCGGCAAGGTGTTCCGGGGCAAGAGCGTGCTGGTGAACCACGTGCGCACGCACACGGGCGAGAAGCCGTTCGGGTGCGCGGCGTGCGGGCGCGCCTTCACGCAGCGCACCGCCCTGCGCACGCACGTGCGCCTCGTGCACCTCAAGGTGCCGCCGCGCGCCAAGGTACACGCACACACACACACACACACACTGCGCGGCGTGCGGGCGCGCCTTCACGCAGCGCACCGCCCTGCGCACGCACGTGCGCCTCGTGCACCTCAAGGTGCCGCCGCGCGCCAAGGTACACGCACACACACACACACACACACTGCGCGGCGTGCGGGCGCGCCTTCACGCAGCGCACCGCCCTGCGCACGCACGTGCGCCTCGTGCACCTCAAGGTGCCGCCGCGCGCCAAGGTACACGCACACACACACACACACACACACACTGCGCGGCGTGCGGGCGCGCCTTCACGCAGCGCACCGCCCTGCGCACGCACGTGCGCCTCGTGCACCTCAAGGTGCCGCCGCGCGCCAAGGTACACGCACACACACACACACACACACACACTGCGCGGCGTGCGGGCGTGCCTTCACGCAGCGCACCGCCCTGCGCACGCACGTGCGCCTCGTGCACCTCAAGGTGCCGCCGCGCGCCAAGGTACACGCACACACACACACACACTGCGCGGCGTGCGGGCGCGCCTTCACGCAGCGCACCGCCCTGCGCACGCACGTGCGCCTCGTGCACCTCAAGGTGCCGCCGCGCGCCAAGGTACACGCACACACACACACACACTGCGCGGCGTGCGGGCGCGCCTTCACGCAGCGCACCGCCCTGCGCACGCACGTGCGCCTCGTGCACCTCAAGGTGCCGCCGCGCGCCAAGGTACACGCACACACACACACACACACACACACACTGCGCGGCGTGCGGGCGCGCCTTCACGCAGCGCACCGCCCTGCGCACGCACGTGCGCCTCGTGCATCTCAAGGTGCCGCCGCGCGCCAAGGTACACGCACACACACACACACACACACACACTGCGCGGCGTGCGGGCGCGCCTTCACGCAGCGCACCGCCCTGCGCACGCACGTGCGCCTCGTGCACCTCAAGGTGCCGCCGCGCGCCAAGCGCACCGCCCTGCGCACGCACGTGCGCCTCGTGCACCTCAAGGTGCCGCCGCGCGCCAAGGTACACGCACACACACACACACACTGCGCGGCGTGCGGGCGCGCCTTCACGCAGCGCACCGCCCTGCGCACGCACGTGCGCCTCGTGCACCTCAAGGTGCCGCCGCGCGCCAAGGTACACGCACACACACACACACACACACACACACACTGCGCGGCGTGCGGGCGCGCCTTCACGCAGCGCACCGCCCTGCGCACGCACGTGCGCCTCGTGCACCTCAAGGTGCCGCCGCGCGCCAAGGTACACGCACACACACACACACACTGCGCGGCGTGCGGGCGCGCCTTCACGCAGCGCACCGCCCTGCGCACGCACGTGCGCCTCGTGCACCTCAAGGTGCCGCCGCGCGCCAAGGTACACGCACACACACACACACACTGCGCGGCGTGCGGGCGCGCCTTCACGCAGCGCACCGCCCTGCGCACGCACGTGCGCCTCGTGCACCTCAAGGTGCCGCCGCGCGCCAAGCGCACCGCCCTGCGCACGCACGTGCGCCTCGTGCACCTCAAGGTGCCGCCGCGCGCCAAGGTACACACACACGCACACACACACACACACTGCGCGGCGTGCGGGCGCGCCTTCACGCAGCGCACCGCCCTGCGCACGCACGTGCGCCTCGTGCACCTCAAGGTGCCGCCGCGCGCCAAGATCAAGGCCGAAGCGCCCCCCGCGCCGCCAGCGAAGCCCGAGTTCAACAAGGAGGCCCAACTGTTCGACTGGCGGCAACCGCCCTGCGAATACTTCATCGTCACCGCCGGCCCCTAG
- Protein Sequence
- MWYRYQYRFPHAQPDEAPPAAALGRQGLLLRRVRRQVCGTGINTGFRTRNQMKHHQLRHSDARDYYCVKCDVRFKSAHTLRQHLQKSLKHKDTQSLKFPCERCDKRFETESARRHHETVQHDGVRAYRCPQCPAALATANSLAKHTRVVHAGRRPPARHVCDTCGKVFRVSAGRQTHAQTDTLRTQRGAPRATCATPAARCSGQTHCGHSVVPRAPRVRHLRQGVPGECGQTHTRTDRHTADTAWCPARHVCDTCGKVFRVSAGRHTHAQTDTLRTQRGAPRATCATPAARCSGQTHCGHSVVPRAPRVRHLRQGVPGECGQTYTRTDRHTADTAWCPARHVCDTCGKVFRGKSVLVNHVRTHTGEKPFGCAACGRAFTQRTALRTHVRLVHLKVPPRAKVHAHTHTHTLRGVRARLHAAHRPAHARAPRAPQGAAARQGTRTHTHTHTARRAGAPSRSAPPCARTCASCTSRCRRAPRYTHTHTHTHTLRGVRARLHAAHRPAHARAPRAPQGAAARQGTRTHTHTHTHCAACGRAFTQRTALRTHVRLVHLKVPPRAKVHAHTHTHCAACGRAFTQRTALRTHVRLVHLKVPPRAKVHAHTHTHCAACGRAFTQRTALRTHVRLVHLKVPPRAKVHAHTHTHTHTLRGVRARLHAAHRPAHARAPRASQGAAARQGTRTHTHTHTHCAACGRAFTQRTALRTHVRLVHLKVPPRAKRTALRTHVRLVHLKVPPRAKVHAHTHTHCAACGRAFTQRTALRTHVRLVHLKVPPRAKVHAHTHTHTHTHCAACGRAFTQRTALRTHVRLVHLKVPPRAKVHAHTHTHCAACGRAFTQRTALRTHVRLVHLKVPPRAKVHAHTHTHCAACGRAFTQRTALRTHVRLVHLKVPPRAKRTALRTHVRLVHLKVPPRAKVHTHAHTHTHCAACGRAFTQRTALRTHVRLVHLKVPPRAKIKAEAPPAPPAKPEFNKEAQLFDWRQPPCEYFIVTAGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -