Hcom029894.1
Basic Information
- Insect
- Hesperia comma
- Gene Symbol
- -
- Assembly
- GCA_905404135.1
- Location
- FR990024.1:3194742-3195200[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8e-08 5e-05 23.7 0.0 3 41 16 54 14 57 0.84 2 2 1.1 9.1e+02 0.4 0.0 15 22 136 143 132 145 0.87
Sequence Information
- Coding Sequence
- ATGCCTCGGAAAAAGAGCCACGGGTTAAAGGTAAATTGGAGCCAAGATGATTTAACCAGTGCATTCAAACTTGTCGAGGAAGGAATATCAATAAGAGTAGCAGCACGTACTACTGGTATCCCAGTTTCAACCCTCCACGAACGCCTGAAAAAAAGGAACTCTGAGTTACTGTGTCGAGGAAGAAATCCAGTCTTCACGAAGGATCAAGAAGCAGAAATAGCAGACCAAGTAAGAGATCTTGGTAAAATTGAAGTGCAGCCGACTTCATTTCAAATAAGAAAGATGGCTTACGAATATGCTGTTAAAAATAATTTGACGCATAACTTTAATAAAAATCTTTGCATGGCTGGAAAAGATTGGCTTGTGGGATTTATGAAAAGAAATAATTTGTGTGACTATAAAGCTGGAGACATGAGCTTAAATCGAGCAACTGCTCTTAACGTGGATGAAGAGCAGTAA
- Protein Sequence
- MPRKKSHGLKVNWSQDDLTSAFKLVEEGISIRVAARTTGIPVSTLHERLKKRNSELLCRGRNPVFTKDQEAEIADQVRDLGKIEVQPTSFQIRKMAYEYAVKNNLTHNFNKNLCMAGKDWLVGFMKRNNLCDYKAGDMSLNRATALNVDEEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -