Hcom027637.1
Basic Information
- Insect
- Hesperia comma
- Gene Symbol
- -
- Assembly
- GCA_905404135.1
- Location
- FR990015.1:16620884-16621323[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-10 1.3e-07 32.0 0.0 1 43 17 59 17 60 0.91
Sequence Information
- Coding Sequence
- ATGCCTAATAAATATAAGAGAAAGACAGTGTCTGTGAGAGGAAACTGGTCGGAAGACTCACTTAAGTCAGCTATTAACGCTGTGAAAAATAATGGGTTATCCGTACGCGCGGCAGGTCTCCAGTACAAAATACCTAGAAAAACACTAGAAAGAAGGATTAAGAAAAATAATGACAAAAAGGGACCGATGGGACCATCAACTGTATTTGGCCAAGAAAACGAGAAGAAATTGGTTACTCATATTAAAGCAATGCAAGCTAAAGGCTTTCCTTTAACGATGGACGACGTGAGAAAAATAGCTTACGAATTAGCCGAACAGTTAAAATTGAAACACAGAAGGAGTTTCTTTGGCTAG
- Protein Sequence
- MPNKYKRKTVSVRGNWSEDSLKSAINAVKNNGLSVRAAGLQYKIPRKTLERRIKKNNDKKGPMGPSTVFGQENEKKLVTHIKAMQAKGFPLTMDDVRKIAYELAEQLKLKHRRSFFG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01091717; iTF_00795640; iTF_00795641;
- 90% Identity
- iTF_00795640; iTF_00795641;
- 80% Identity
- -