Hcom027762.1
Basic Information
- Insect
- Hesperia comma
- Gene Symbol
- -
- Assembly
- GCA_905404135.1
- Location
- FR990015.1:17848403-17853021[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-06 0.0036 17.7 0.1 3 38 232 267 230 274 0.88 2 2 2.9e-06 0.0025 18.3 0.0 4 34 309 339 307 348 0.88
Sequence Information
- Coding Sequence
- ATGGAATGCGATGATAAAATAAATGTTCATAAATTGGACAAAACACACAATGACAACATTGGTGGTATTGATGATGAGAGTCAACAGGATGATTATGATGTACAAGAAGATGCAGAGGATCAAAATAAAAAGGTGATCAAAGTTGCAGGTAGAGGTACTCACAGGTGTTCATGTTGCTTGAGTACGGATAAGTTATGGAGCCTATGGCACAATGTCTCCAGCAATGGCATGTCTGAGGTCTACGGTTCTATGCTGATAGAATGCTTTTCATTATCTTGGTACCAACCAAAAAACCCAGAGAAAAGTACAGAACAGATCTGTGAACAATGCATAGCAAGGTTGAAAGAAGCGGTCAGATTTAAGATCGAAGTTTTGGCAGCTAGAAGAGTTCTGAATGAGCAAGATGGGCTTGCAAATAGCATAAAACAAGAGGAAATGTTAGTTGTGGAAATTGGAGGAGATTTACAACCGGAGTATCTTAATTTGGAGAATGACCACCTGGATGATAACGGTGACATCCAGTCGGGTGATGATGGGTTACATGGAGACGTTAAATCTGATGATCCTATAAAAGTAAAGCTGGAACCGTCACCAGAGCCAGAGACCTGGAGCGAGGCTCAAGCCAAGACCCCAATCAGACGGAGGACGAGATTGAGCGAGTCCATACCGAAGAGGTACAAGCAGTACACGTCTGATGACGTCCAGCGAGCCGTGCAGGCGGTGGCTGCGAAGACCATGTCGCAGAACACCGCGTCTAAGACCTTCAAGGTCCCTGTCAGAGTCCTAGCCAGTGCATTGAAGAGTTATGTAGAAATCAAACAGGAGGATAGCAGTGAACCAATAGGTCCCAAAGTGGCAAGTCCGGCGCGTCGCAAGCGGAACCGTCCTCCCAGAGAGAAGAAGAAACAACTGTATCCGGAACAGAATCTCCTTCAGGCCTTCGAGGAGGTGTGGAACAAGCGGATGACCAACACGCAGGCCTCCAAGTTTTACAAAGTCCCCAGATCGACTTTGTTTGATCTGGTCAATAAAAACCTCGGCAAGCCAAGGTCCATGAAGAAGAAACTGAATGAAGGCCCACAGGAGATGGTGAAGCACACCACCAACATCCTCACCATCATGGAGAACTCCAACGCCACGCCGATCCGTTGCCATGGCGACGGAGGCTACATGTGCTGCTTCTGCAACCAACAGTACCAGATACCTAGCGATCTGAAGAACCATACTTTATTCCATCATGACTTTAAGACGAGGAGAACATTCACTAAGGGCAAAAGACCATCTTCATACTTCGTTAAGCTGGATATATCCTATTTAAAATGCACTATATGCAACACTGATATGGCTACGTTGGAAAAATTAATAGACCATCTAATCAACGACCATCAGAAGCTGATATACACGGATATTAAGAATCACATTCTGCCATTCAGGAACTTTAATAGTGTCCCTGCGTTGAGGGTGCATAGGAAACGCGATCATTTGATGGAAAGGAAGTATAAGTGTACAGAATGTGACATGGATTTCTTTGCACGAGCCGAGCTCACTGCTCACATGTTGAAGCATTCAGGGGTGAGGGAGTTTCAATGTGATGTGTGTCAGAAGTTGTTCAAACGAAAGTTCACCCTTACTGAACATATGAGGATACATGAGAATAATTGCAGGTTCAAATGTGATCATTGTGGGGCAGCGTTTGTGCAAAAGTGCAGCTGGAGAAGTCACATGAGAAACAAACATGGCATTATTAGCTAA
- Protein Sequence
- MECDDKINVHKLDKTHNDNIGGIDDESQQDDYDVQEDAEDQNKKVIKVAGRGTHRCSCCLSTDKLWSLWHNVSSNGMSEVYGSMLIECFSLSWYQPKNPEKSTEQICEQCIARLKEAVRFKIEVLAARRVLNEQDGLANSIKQEEMLVVEIGGDLQPEYLNLENDHLDDNGDIQSGDDGLHGDVKSDDPIKVKLEPSPEPETWSEAQAKTPIRRRTRLSESIPKRYKQYTSDDVQRAVQAVAAKTMSQNTASKTFKVPVRVLASALKSYVEIKQEDSSEPIGPKVASPARRKRNRPPREKKKQLYPEQNLLQAFEEVWNKRMTNTQASKFYKVPRSTLFDLVNKNLGKPRSMKKKLNEGPQEMVKHTTNILTIMENSNATPIRCHGDGGYMCCFCNQQYQIPSDLKNHTLFHHDFKTRRTFTKGKRPSSYFVKLDISYLKCTICNTDMATLEKLIDHLINDHQKLIYTDIKNHILPFRNFNSVPALRVHRKRDHLMERKYKCTECDMDFFARAELTAHMLKHSGVREFQCDVCQKLFKRKFTLTEHMRIHENNCRFKCDHCGAAFVQKCSWRSHMRNKHGIIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00796062;
- 90% Identity
- iTF_00796062;
- 80% Identity
- iTF_00796062;