Htar026569.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- -
- Assembly
- GCA_945859575.2
- Location
- OX243849.1:18799053-18815495[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00034 0.036 15.6 0.7 1 23 297 320 297 320 0.97 2 10 0.08 8.4 8.1 4.6 1 23 327 349 327 349 0.98 3 10 0.2 21 6.8 1.7 1 23 353 375 353 375 0.95 4 10 0.0079 0.83 11.3 5.3 2 23 381 403 381 403 0.96 5 10 0.00044 0.045 15.2 1.3 1 23 407 430 407 430 0.96 6 10 0.11 12 7.6 0.3 2 20 446 464 445 466 0.91 7 10 0.00021 0.022 16.2 1.1 2 23 512 534 511 534 0.96 8 10 0.15 16 7.2 0.2 1 23 545 566 545 566 0.95 9 10 0.00023 0.025 16.1 3.5 1 23 572 594 572 594 0.98 10 10 7.6e-06 0.00079 20.8 4.9 1 23 600 623 600 623 0.98
Sequence Information
- Coding Sequence
- ATGTCTGAGCTTAAAATTTGCCGGGTGTGTTTAAGTAAAGACGTAAAAATGTACAGTTACAATGAGTTTAAGTTGAACATATATTATGAAGAAGTTTTAGATCAAAAAGTTATAGATGGATTACCTCTTTACTTCTGTTATGAGTGTGCTGCAATGCTGTACAAGTTTCATAAATTCAAGGAGAAGTGTCACACTGGACAGGATACACTTAAAGAGCTGCTGTGTACTAATGGAGATATAACACCCACTTCAGTATCACAAGTATGCAGAAAGACAAAAAAATTAAAATCCAACCTCAATAACTCAACTGAGAGTAATAGAATTAAGACATGCCATATAGTTTATAAATCATTAGATTTCATAAAAAGCGAAGAAGAAGAAGAATCTAGACACTCCAACAAGGAAGACACAGAAAATGATGCTGATAATATGTTAGAATATGATCTTGAGATAAAAAATGAACAAAAAAATATTGTTGATGAACAAAAGATAAATGCTGATGAAGAAAAGATAAATGTTGATAAGGAAAAGGTAACTCTTAAAATTGAAGAGATATACACAGAAGATCCATTGTTTAATGATAGACTTGTAAGTGAAGAAACCAATCTGAAACTTGAATTTTGTACAAAAAAGATAGTAAAGAACATTTCAAGTAGTTTAAAATCAGAACATAAAGAAAAGATAAAAATTGATAGTAAAAAGAAAGATAAAACTACTAATAAAATAAAAGCTTTTACTAAAGATAAACCAAAAGAAAGAAAAAAGTTTGCACCATCAAAAACAAGACACTTAGATCCGGAACATTGGTTGAAAATAACCCTGTCAGATGTTGAAGCTATGGAACATTTTAAATCAAAAAGTTTTAGTGCAACATTCTTAAAAGCTACTTACAAATGCGAAAAATGTTATACACCATTTTCTAAAGAAGACATGATGGTTAGGCATATGTCGTCAATACATTGTGAGGCCCGTGGTTCGTATGAATGCGCTTTCTGCTGCAGGCGTTTTAAAACCAAGTCTCGGTTAAGCACACATTTGTCAGTTCACTACAATAAATACAAGTGTCTCAGGTGCAACCAGGTGTTTCATGTTAAAGACTCGGCGCGTTCACATAACGAAGTACATAGTGGAGTGATGCGGCAATGCAAACATTGTGGACAGAAATTCAGTCATATCACAACATACTACTCCCACTTACGTCTATACCATCGGAGTGAGCACGTATGCACTTTATGTGGGGCGTCGTTCGTCAGCGAGAAGGGTTTGCAACAACATAAGAATAAGAAGCATTTGAATGTATTAATTAAAACAGATGATGTAAAAGGCGTGAACACATATTGTGAAAGATGTGACATCAAGTTTGAAACTTCAAAAGCGTACGAGGAACATTTCAATCAGTCAGATAAACATGCTGATCATCAAACAGTGGGAGATAACAACCTAGTACAAATTGACGTAAAAGATACCCCAGCACCGATTACTTTAAAAGGCAAAACCAAAACGAAAAATAAGCGACAAAATGTTACTAGGATAACGTGTCCAGTTTGCAATAAGGTGTTTCCAAGTTACTATAGATATGTGAAGCACCATCGCTCAGAACACAAAGGTTTACCAATAACACCCAAACACACACATGTTTGTGAAATCTGTGGAGCCACCATCAGGGGATACAATATTACATCGCACATGAATATCCACACCAAAGAGAAAGAATACTCTTGTGATACTTGCGGAGTGCACTTCTACCATTTAAGTAGCTTGGGAAGACACCAGTTGACACATACCGGAGAGAAACCGTATAAGTGTCCATTATGTGACAAGAGATTCACGCAGAAGAATAGTATGCAGCTACATCATCGTACCTTCCATTTAAAAGAACCATATCCGAAGAGAGCTAGAAGAAAAAAGAACATAGAATCCCAAGAAATACCGTTGTTTGAAGATTTTAGTGAAGATTCTAAAGATTAA
- Protein Sequence
- MSELKICRVCLSKDVKMYSYNEFKLNIYYEEVLDQKVIDGLPLYFCYECAAMLYKFHKFKEKCHTGQDTLKELLCTNGDITPTSVSQVCRKTKKLKSNLNNSTESNRIKTCHIVYKSLDFIKSEEEEESRHSNKEDTENDADNMLEYDLEIKNEQKNIVDEQKINADEEKINVDKEKVTLKIEEIYTEDPLFNDRLVSEETNLKLEFCTKKIVKNISSSLKSEHKEKIKIDSKKKDKTTNKIKAFTKDKPKERKKFAPSKTRHLDPEHWLKITLSDVEAMEHFKSKSFSATFLKATYKCEKCYTPFSKEDMMVRHMSSIHCEARGSYECAFCCRRFKTKSRLSTHLSVHYNKYKCLRCNQVFHVKDSARSHNEVHSGVMRQCKHCGQKFSHITTYYSHLRLYHRSEHVCTLCGASFVSEKGLQQHKNKKHLNVLIKTDDVKGVNTYCERCDIKFETSKAYEEHFNQSDKHADHQTVGDNNLVQIDVKDTPAPITLKGKTKTKNKRQNVTRITCPVCNKVFPSYYRYVKHHRSEHKGLPITPKHTHVCEICGATIRGYNITSHMNIHTKEKEYSCDTCGVHFYHLSSLGRHQLTHTGEKPYKCPLCDKRFTQKNSMQLHHRTFHLKEPYPKRARRKKNIESQEIPLFEDFSEDSKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -