Htar008832.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- Sall1
- Assembly
- GCA_945859575.2
- Location
- OX243835.1:3716584-3727813[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.3 2.4e+02 3.5 0.4 2 23 6 27 5 27 0.96 2 13 0.074 7.8 8.2 0.0 1 23 1007 1030 1007 1030 0.93 3 13 2.3 2.5e+02 3.5 0.0 1 23 1107 1129 1107 1129 0.94 4 13 9.6e-06 0.001 20.4 2.2 2 23 1132 1153 1131 1153 0.97 5 13 0.00018 0.019 16.4 2.5 1 23 1159 1181 1159 1181 0.98 6 13 0.0084 0.87 11.2 2.5 2 23 1188 1209 1187 1210 0.95 7 13 0.02 2.1 10.0 1.1 3 23 1248 1269 1247 1269 0.96 8 13 0.039 4.1 9.1 0.0 2 23 1289 1309 1288 1309 0.96 9 13 0.002 0.21 13.2 0.9 3 20 1317 1334 1315 1337 0.85 10 13 0.023 2.4 9.8 0.9 1 23 1345 1367 1345 1367 0.98 11 13 0.0059 0.62 11.7 7.2 1 23 1373 1395 1373 1395 0.98 12 13 9.4e-06 0.00099 20.5 1.4 1 23 1401 1425 1401 1425 0.97 13 13 0.0011 0.12 13.9 4.2 1 23 1431 1453 1431 1454 0.95
Sequence Information
- Coding Sequence
- ATGGATCAGCTCGTGCAGTGTCCCGTCTGCACGCTGTTTCTCCACAATGGGATGACTCTGGAGTCACATTTGGACACACACCCTAAAGACCAGGTTATAAAAGCATTGTGTAGTCTGACATCAAAGGGTCCTAGTTATGGAAGCAGGACTTCCACTCCACTACATTCAGAACGGTCATACAGAAGCAGATCACGGACACCTGCCACTGATGATGGCAGGTGGAATGGGTCCCATAAAAGTGAGGAACGCTATTGGCGTAGAACACCTAGTAGAACCCCTAAAACAAATGCTGTGTCAAGTGCTTCTAGAAACTTAACACCTGATATGCGGATGGTTGATTTAAATTTTGAAAATAATGCTTCTGCTCCTGTAGGACAAATAGCAAGTGCTCCATTTGTAATGAAAGCTGATAAAATTCAACAAACATTTCAGTCACCCCCAATATCAGAATTTGATCCACAATACATTTACTATGATCAACAAGAGGATAGAGAGGTCAAATATTCCCGTAGTGCTGAATACAACTCTATTAACAGTCCTAACGGCATGTTTGCATATAACAACATGGTACCACCAGTGGCACCAGGTGTCAAACTGTTACCAGCCGTGCCCAAGAGAGGGAATGACCTTACAAAAGTCTTACCAAAACCAAATAATATACTCCTTAAAAATATGGGTGGTGTGCAATATATAAACCCTGGAGCCAAACCAATGCATGTTATGGTGCCAAGTGCGTCCACAATTGTGCAGAAAAATGTGCAAAATAATATGATAATGACAGGTAGTATGCCGAATTTACAGATTCAAATTGACGCAAAGCCAGGTGCTCCTCCTGTGTCTAACAACCAGCTGAACCAAATGACCTCGAGTTCTTTCACTCCAGGCACTACTGTTGTTACCCAAAACTCACAAATAATTTACAGAGAAATGGTAAATAATGTAGATGGTAAGCCTTTTATAACAAGTATGCCAACAGTACTAGGTGCTCATGATAATGTCACAAATCTGGCTCAAACCAGCTCATTGTACCAAAATGTAATGGTTGTTGATCAATATGGAAATACCTCGTGTATGTATACTTCACCTCAACAAATAATGCCTAAATGTCCTACTGTATATAGTGAAGCTTCTTCTATAGTGCCTAATACTGTACAGAAGTCTTCTCAAAATGTGAATGACCCTAAGACACTTATAATTGAGGTTGGGCCCATTATGTCATCAGGTTCAGAAAATATGCGTGAATCTACCAGCTCAAATGATGCTCAATCTAACACGCAAAGTCCAGTTGAAAAACATGACAAACAGACTGAGAATGTAGAAGCAAAGAGTGAAGGGTCTGGTGTCACTAAAGGTCTGAAAATTCTTAGTAACATAAAAGTTGAAGTACCTGTGCAACATCATAAAAATATGGTGAACACAGTTATGGATCTCACAGGGCCTAGTGATTCCGATTACCCTGTGGAAAGGGTTCCGTCACCCGAGAAAATACTACCCGACCTAGAGGATAATGATAATGACGATTCTGAAATGTTATCCAATGAGTGCATACAACCTTCAGAATCTAGTGCTGATAGTGTCACTTCTTTTTCTGTGATAAAGAGTAAATCTTTAATTAAAGATTCAAACAAAATTATTGATAGTAAAATGGATACTGAGTTTTCAGACAGTTGCCCAGTTCCTGATTTAATATGTAATGAGAAACCATCAATATCCCCTTGTAGTGAATTGTCAGAGAATGGTGACAATTCTACTGATCGTACATCAATATCTCCCAAACCTGTAAATAGTCAAATTAGCCACAGTAGCATAGATCTTCCAGAGAAAAAAATTCTACTTACACAGAAGCCGTACAGGCAAAACACATTAAGACTTAACAATATTTATGTAAAAAAAAACAAGAAAGTTTTACAGATAAAGAATGCTAAGGGGTTTAATGTAAGTAGTACAATTAAAAAAACAGAACCTATAGCATCATCATCTAATGTGAAAGCACCGGAAAATTTTACAATGAATAAATTGCATCAACCAGATAAGAGTGAAAATAAGGAAAAGTCTAGTGTGTTGCAAACTATATCTGTGGAGGAAATCAAGGAAAATGATAATGACATTGACAATGATGATAATAATGAATTTGATGCTGACACTGAAGAGCAGTCGATGGATATAGAGCCAGTGGCACCATCGAGTATGAACCAACAGAATCAATTCACTGCAACAATAGACTTGCAATGTGTACAGGTAAAGGAGGAAATAAACACTAGTAATGAAGGAGCGTTTAGTAATCACACAGCGACGTCAGACCGTGAGCTCGCACCAATGGAGTCATTGCGTCCGATCAACGTAGTGTCCTACGCAAACATGTCGGGGGATTTCGACGAAGATTCAAACGATAGGGAATTACTCGACCTTGAAACTGCTTCAAAGAACAAGCAGTTTGTGAGTATGATGAACGAAAATTACTTCGGTGATAATATCTACGCGGACTATTTCACTGCGGATCGGGTAGAGTCATTCGAAGCGGAGAGGGAGGCGGCAGGTTTCAAGGAGGGTCCGAAAGATGGTATGTATAATATCTGGGGTGAGCCGTCTCAGAAGGACAATGAGAACGAGTTTGTTCTTCCTAACTTTATACACGAGAGCTATAAAATAGCGGAGAGTAGTGGAATAGATTATTCGGAGATCGGTACAGAGGGACAGGGCGATGGCGAAGGTGACGGGTGCGAGAGAGACAGCAAGGCCGACGTTTTGAGCGAAGGTCGCAGCGAGAGTGAAGCGCCGCTGAACATATGTGCCGATGAGCGAATGCCGCCACGAGGCGAGCTCAGCGGCCAGGAGAGCAATGGAGATATGGAGTCACCTTGGGGAGGGATGTATACGGACGTACCAGCGACGGAGCCGTACGACCTGATGGCCAGGGAGAGCTGGGTCTCGGACGGCTCTGATGTCGACGTCACCGAGAAGAGGGAAACATTGTCTGAGGAGTTACAATTCGGCGCAGTGTCTCGTACCGCTCGCGTATACTCGTGTAACGTTTGTGGCGCGGGCGCAGCGTCGCTCAAGGAGCTGCGAGCTCACCGCGCGCTCGCGCACGCTGAACCGCCGCCCCCCCACACCTACAGCCGGTTAGTCACTGATAGGAAGATCAAAAAGGAGGAGAAGTTGGAAGATGCTAGTCTACCCAATAATCTTCTGAAGAATGAGATCGACACTAAAGAACCGATAACATCTACCATTCTACAAGTGTACGACACTTTGGAAGAAGCCAAACCGAAGTTAGAAGGCCTGATCAAGGAGGAAACGAAGCGGAAACGGAAGGACTACGTGTGTCCAACTTGTAAAGTGGACCAAGAGACGGAAGCTGGGTTCAACGCTCATCTCAAGATCCATCCTCTCGAGTGCCTCACATGCGGGAAGTGCTTCTTCAGAAGAGCGAACTTAGCCCTCCATATGAAGACTCATTTAGGGATTAGGAATTATAAATGCGAGGTGTGCGAGAAGCGGTTCATAACTCGCCAGAAGCTGATGGAGCACCACAACGTGCACACAGGCCGGCAGCCCGTCAAGTGCACCGTGTGTGACGACACCTTTAGGAGATACTCAAATATGGTGCAACACAGAGACCGGCACCACCTGCAGAAGCGCGCCAAGGTGCGCGACTACGTGTGCGGCTGCGGCGCCGTGCTGCACTCGCGCGCCAAGCTGCTGTGGCACAAGGAGACGCACGACGACAAGCCCAAGGCCTGCCTCTACTGCAGCGACAAGTTCGTGCACGCCGCCTCGCTCACGCGCCACGTGCGCCGCTCGCACAACGAGTACTTCCTGTCGCACAGGAACACCAAGGGCCGCCTCAAGGCCGAGAATGTGCCCTGTCCCGTCTGCAAGCAGATATACCTGCGAGCAAATCTACGCGCCCACCTTCTGACACATAGCGGTCAGAGACCATACCTCTGCATCATCTGCAACAAGTCCTTCACCACCAAATGGAACCTCAAGCTTCACCGATGGACGCACATGTCCCGCTCAGCCAAGCCCTACAAGTGCTCACTATGTGCCAGCGCATTCATCAGACACACAGAATACATCTCACATATGAATGCTCACAAATGCGTAAGACCTTACACTTGCAACTACTGCGGGTGCCAATTCATCCGCAAGTACAACTGCCAACGGCACGTTAGAGAACATGAAATGGCTAAGAAGTTCGTCTGTAAAGTTCCAGAGTGCGGTAAGTCGTTCCATAGGAGTTATTATCTATCTGAACATATGAAGGTGCATAGTGGGGCGAGGCCTTTCGCTTGTAATATCTGCGGGAAGACTTCCAGTAATAAGTCTAACCATAATAAGCATGTGAAGATTCACCACGCTCGCGAGCCGGTCGCCACTGAGGCGTAA
- Protein Sequence
- MDQLVQCPVCTLFLHNGMTLESHLDTHPKDQVIKALCSLTSKGPSYGSRTSTPLHSERSYRSRSRTPATDDGRWNGSHKSEERYWRRTPSRTPKTNAVSSASRNLTPDMRMVDLNFENNASAPVGQIASAPFVMKADKIQQTFQSPPISEFDPQYIYYDQQEDREVKYSRSAEYNSINSPNGMFAYNNMVPPVAPGVKLLPAVPKRGNDLTKVLPKPNNILLKNMGGVQYINPGAKPMHVMVPSASTIVQKNVQNNMIMTGSMPNLQIQIDAKPGAPPVSNNQLNQMTSSSFTPGTTVVTQNSQIIYREMVNNVDGKPFITSMPTVLGAHDNVTNLAQTSSLYQNVMVVDQYGNTSCMYTSPQQIMPKCPTVYSEASSIVPNTVQKSSQNVNDPKTLIIEVGPIMSSGSENMRESTSSNDAQSNTQSPVEKHDKQTENVEAKSEGSGVTKGLKILSNIKVEVPVQHHKNMVNTVMDLTGPSDSDYPVERVPSPEKILPDLEDNDNDDSEMLSNECIQPSESSADSVTSFSVIKSKSLIKDSNKIIDSKMDTEFSDSCPVPDLICNEKPSISPCSELSENGDNSTDRTSISPKPVNSQISHSSIDLPEKKILLTQKPYRQNTLRLNNIYVKKNKKVLQIKNAKGFNVSSTIKKTEPIASSSNVKAPENFTMNKLHQPDKSENKEKSSVLQTISVEEIKENDNDIDNDDNNEFDADTEEQSMDIEPVAPSSMNQQNQFTATIDLQCVQVKEEINTSNEGAFSNHTATSDRELAPMESLRPINVVSYANMSGDFDEDSNDRELLDLETASKNKQFVSMMNENYFGDNIYADYFTADRVESFEAEREAAGFKEGPKDGMYNIWGEPSQKDNENEFVLPNFIHESYKIAESSGIDYSEIGTEGQGDGEGDGCERDSKADVLSEGRSESEAPLNICADERMPPRGELSGQESNGDMESPWGGMYTDVPATEPYDLMARESWVSDGSDVDVTEKRETLSEELQFGAVSRTARVYSCNVCGAGAASLKELRAHRALAHAEPPPPHTYSRLVTDRKIKKEEKLEDASLPNNLLKNEIDTKEPITSTILQVYDTLEEAKPKLEGLIKEETKRKRKDYVCPTCKVDQETEAGFNAHLKIHPLECLTCGKCFFRRANLALHMKTHLGIRNYKCEVCEKRFITRQKLMEHHNVHTGRQPVKCTVCDDTFRRYSNMVQHRDRHHLQKRAKVRDYVCGCGAVLHSRAKLLWHKETHDDKPKACLYCSDKFVHAASLTRHVRRSHNEYFLSHRNTKGRLKAENVPCPVCKQIYLRANLRAHLLTHSGQRPYLCIICNKSFTTKWNLKLHRWTHMSRSAKPYKCSLCASAFIRHTEYISHMNAHKCVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKFVCKVPECGKSFHRSYYLSEHMKVHSGARPFACNICGKTSSNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00281692;
- 90% Identity
- -
- 80% Identity
- -