Htar034175.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- -
- Assembly
- GCA_945859575.2
- Location
- OX243857.1:2200147-2204075[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.014 1.4 10.5 0.3 1 23 225 248 225 248 0.93 2 18 0.00011 0.012 17.1 2.8 1 23 253 275 253 275 0.98 3 18 6.1 6.4e+02 2.2 0.2 2 23 279 300 279 300 0.84 4 18 0.0016 0.17 13.4 0.5 1 23 305 328 305 328 0.95 5 18 0.018 1.9 10.1 0.5 2 23 389 411 388 411 0.93 6 18 0.0008 0.084 14.4 1.2 1 23 417 440 417 440 0.92 7 18 0.0095 0.99 11.0 0.7 2 21 444 463 443 464 0.92 8 18 0.85 88 4.9 0.1 3 23 474 495 472 495 0.93 9 18 3.7 3.8e+02 2.9 2.4 1 23 500 523 500 523 0.94 10 18 0.0037 0.39 12.3 0.1 2 23 536 557 535 557 0.96 11 18 0.0083 0.87 11.2 2.3 1 23 563 585 563 585 0.97 12 18 9.3e-05 0.0097 17.3 0.8 1 23 621 643 621 643 0.97 13 18 0.0052 0.54 11.8 0.1 3 23 649 669 648 669 0.94 14 18 0.0003 0.031 15.8 4.2 2 23 687 709 686 709 0.96 15 18 0.00043 0.045 15.2 1.6 1 23 715 737 715 737 0.98 16 18 0.0051 0.53 11.9 6.3 2 23 744 765 743 765 0.96 17 18 2.1e-05 0.0022 19.4 1.4 1 23 771 794 771 794 0.97 18 18 5.8 6.1e+02 2.2 3.8 3 23 801 822 799 822 0.94
Sequence Information
- Coding Sequence
- ATGTCGGACTCTATGGAATCAGATAACATGGAGTGGCTGAAGCACAAATTAAATTCAATATGGACCTCGCCCAAGTTCTGCGGTCTTTGTTTGGAGAACACGGGCACAGACTTTTGTCCCGTAGATATGGAACTAATGATCAACAAGCAAAAGTTTTCAAAATGTTTGCAAGATATCATTAATTATGTTTTTAATGAAGATATTGAAAACCTCATGTCAAGCCGTTACCTCTGTGACGCATGTACAGAAAAAACAATACAATCCTACCTCTTCATACACAACACAAAACAACTATCAAGAATCATGAACAACTGTGTTTCTGACATCTACTCCAAAGTCACTGACATCAATGATCAACTCTGTTCGTCAACAAACTATGAAAACGCTAACGTCATGATCGTCCTAGAAACAGATGGAGATTTGTACAGAACTATTATAGATACACAAAAGACTGAAGTTGTGCCAATACCTGCACCCATACCTATGAAAATCGAAGAACCAAAACCGATTCTAATAATCGAGTCTTCTATTAAATCAATTCCAAAAGAACCAGTGATAACACCAAATAAACCTATAAAAGTTGAAGGAACACCTAATATAACTTTAAAAGAAGGCCATATTGTTATAAAACCGTTGAATTCTGCCAGAAATTTAACTCCACACTATAACACTTATGCTTGTTCCGATTGCCCTGATATCTTTACAACATATAGGTCTTTAAAAGAACATGAAAAAGCAAAACACAAGAGGTCTGTTTTTAACTGTAATTTGTGTGAAAAGACCTATAATACTCGCCAGTATTTAAATATACATTATAAAACACATGCAAAGGCCAAATGTAAATTTTGCCAAGTGATTTTACCAGAAGGTGAATTGATGGAACATTTGAGAACCAACCATGCATATTTGGTGTTCCCTTGCAAGTTTTGTGATTTAGTATACTATTCTCAAGATTCTTTAGTAACTCATTTTAATATAAGTCATTTAGTTAACAATATAAAAGCGAAATCACAATGTATTATGTGTTTAAAAGATTTAAAAGATGATGAAATTAAGAAGCATAAATGCAAGTTTGCTTGTTCAGAATGTTTTGTAATGCCCTGCTTACATTATAAGTATTTGATGTCATACAGAGAGCAAACATTGAACCATGCTAACAAAGTGAAATGTATAGATTGCGATTATGTTACTAGAAGAAAAGAACATTTGATAGGACATGTTAATAGAGAACATTTAGATCATCATCCATTTACTTGCGCGGATTGCGGGCAACAATTCTATACAAAACTTAGTTTAAAGACTCATTTAGTGCAGTTCCATCAAGATCTGAATTGTGAGTTCTGCGATTTTGAATTTAAAGACAATAATACATTGGAAAACCATAAAAAATCGTGTAGATTTGTCATTCGCGCTTATGGCTGCAATCAATGTACCGCATCTTTCGATATTGAGGAAGAATTGGTTAATCATGAAAATCTGAAGCATAATGACAGTGTACATAGTTGCAATCTTTGTAAAAGTAAATTCTTAACTAATATAGAATTAGAGGAACATCACGCTAGAGTACATGGTGGAATTCAATGTAAGAAACGAAGGAAACATATAGAGTGTTCGCTATGTGATATCATGTTTAAAAATATCAAAGAGTTGGTTCAGCATGAGAAATTACATGAACCAGACGATATATTTCCATGTAAGGTGTGTTCGAAACAGTTTAAAAGCCTAATGAAATTGTATATGCATAGTCAAAGACATTACACTAATAGGATAAAATGTAATCGTTGTAATAAGAAAGTTGCTGCATCATTCTATCCGCAACATGCAGTGCGATGTCCTTACAAAAGAGAAGGTGCTCTAAAACATGTTTGTGAGATCTGCGGCAAAGCATTCCATTTGGAATCATTACTTATTCTACACCAGAAGGTCCATTTGAAACGGGAACCCTGTCCGCAATGCAACAAAGCAATCAAACCATCCAGTTTAAAACGACACATGGAGCAAATTCATGGTGATATATCAGATAAACAGAAGAAGTTGTTGATGAAGCAACCTACAATCACTTGCGAGGTTTGTGGTCATGTATGTAGAAAGAAACATGACTTAGAAGCTCATATGAACAGGTATCATTTGAAAATCAAGCCGTATGTTTGCAGTATATGCAGCAAGGATTTCTGTGGTAAAACCCGGTTGAAAGAACACATTGCTACTCATACTTCAGATAACAGTTGCTTTTGCTCTGTGTGTGACAAGAAATTTGCTAACCGAGTTTGTTTAAAAATGCATTTTAGAATGCATACTGGTGAGCTACCATACCCATGTGATATTTGTGGCCAAAAATTCAGGTCTTCGAGTATGATGAAGACACATAGGTTGAAGAAACATTTGAATAAGACAGTTTGCTGCCCTCTATGTGATAGTATGTTCTATATGGTACGAGAAATGAGACATCACTTTAAGAAGATGCATTGGAAGTTTAAGGATAGGCCGTTTAATGTGAGAGAGGTTGAGGAATTATCAGAGGAATTCTATCATTTGTTTGAGGATGGAAGACTCCCTAAACTGGATACCTGA
- Protein Sequence
- MSDSMESDNMEWLKHKLNSIWTSPKFCGLCLENTGTDFCPVDMELMINKQKFSKCLQDIINYVFNEDIENLMSSRYLCDACTEKTIQSYLFIHNTKQLSRIMNNCVSDIYSKVTDINDQLCSSTNYENANVMIVLETDGDLYRTIIDTQKTEVVPIPAPIPMKIEEPKPILIIESSIKSIPKEPVITPNKPIKVEGTPNITLKEGHIVIKPLNSARNLTPHYNTYACSDCPDIFTTYRSLKEHEKAKHKRSVFNCNLCEKTYNTRQYLNIHYKTHAKAKCKFCQVILPEGELMEHLRTNHAYLVFPCKFCDLVYYSQDSLVTHFNISHLVNNIKAKSQCIMCLKDLKDDEIKKHKCKFACSECFVMPCLHYKYLMSYREQTLNHANKVKCIDCDYVTRRKEHLIGHVNREHLDHHPFTCADCGQQFYTKLSLKTHLVQFHQDLNCEFCDFEFKDNNTLENHKKSCRFVIRAYGCNQCTASFDIEEELVNHENLKHNDSVHSCNLCKSKFLTNIELEEHHARVHGGIQCKKRRKHIECSLCDIMFKNIKELVQHEKLHEPDDIFPCKVCSKQFKSLMKLYMHSQRHYTNRIKCNRCNKKVAASFYPQHAVRCPYKREGALKHVCEICGKAFHLESLLILHQKVHLKREPCPQCNKAIKPSSLKRHMEQIHGDISDKQKKLLMKQPTITCEVCGHVCRKKHDLEAHMNRYHLKIKPYVCSICSKDFCGKTRLKEHIATHTSDNSCFCSVCDKKFANRVCLKMHFRMHTGELPYPCDICGQKFRSSSMMKTHRLKKHLNKTVCCPLCDSMFYMVREMRHHFKKMHWKFKDRPFNVREVEELSEEFYHLFEDGRLPKLDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00281660;
- 90% Identity
- -
- 80% Identity
- -