Htar035210.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- -
- Assembly
- GCA_945859575.2
- Location
- OX243858.1:6802395-6822776[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.031 3.3 9.4 0.1 1 23 199 222 199 222 0.97 2 12 0.012 1.3 10.6 2.1 1 23 387 410 387 410 0.97 3 12 0.0032 0.34 12.5 0.2 1 23 417 439 417 439 0.98 4 12 8.9 9.3e+02 1.7 0.3 1 22 443 464 443 466 0.86 5 12 0.14 15 7.4 2.2 1 23 473 495 473 495 0.87 6 12 2e-05 0.0021 19.4 0.8 2 23 500 522 499 522 0.93 7 12 2.3e-05 0.0024 19.2 0.9 1 23 528 550 528 550 0.98 8 12 0.097 10 7.8 2.7 2 21 561 580 561 585 0.93 9 12 5.2e-05 0.0054 18.1 2.6 1 23 593 616 593 616 0.94 10 12 0.00048 0.05 15.1 0.9 1 23 621 644 621 644 0.97 11 12 4.1e-06 0.00043 21.6 3.2 2 23 652 673 651 673 0.97 12 12 1.4e-05 0.0015 19.9 1.4 1 23 679 702 679 702 0.95
Sequence Information
- Coding Sequence
- ATGGAAACTGAATCTCTATGTTGTGGTTGCTTAAGCATTGGACGAAAAATGATGCGATTAGGTAGAGGTGAAAAACTACAATGTTTTACGCAAATTATTGGCGAAATAACTTTGTCAAAAGCCGAGCAACCACAAGTGCACTTATGCTGGGAGTGCTACGCTAGGCTGAAAAACTTTGCTAAGTTTACAGAAAAAGTGAAGAGGTCTTATAATTTGTTTAGTGAATATTTAAAACAGAACAAACCAAAATCATTTCTACACTTTTCCCCACCAAACCTCACAACCCATGAACTATACACCATAGACATACAACTCACAGAAAAGAAAGAAGCACCCCTAATAGAAGTCATAAAAACCGAAAACCAAAGACAATTAACTCCAGAACCAGAAATAAAAGAAGAATATGACACTGCTATACCCGAGACGAATTCAGATGACGAAAAGCTCATAGACATATCGAAAAAAATAGCTAAAGTCAAGAAAAAGAAGAGAAAGAGAAAAGAGGAAGTTTTTAAAGAGGTTGAGTTGAGTCGAGAGGAGTTGGAGGAAGAGAGAAGAGCGGCCTTGTTGGCAGAAGATTACGTCAATGCTATGTTTCAATGTGAGAGGTGTATAGTTAGTTTTCCTAATGCTGAAGATTTGAGCGATCATGTTAGGTTGAAACATGAATTGGACCTCAACGAGTACCTCTTCACGGACGTGTCCCGGCCGCCTCTTTTGACAATACACAAGACTGAACCAGTTAACATAACACCTACAGACTCTGAGTGCCAGGGACCCGCATCAGTTAATGTCAAAGATGAGTTAGGTGATCACTCGGATTGTTCTAAAGAAGACAGCATTGACCATAGTAAGGACAACTGGCTCTCAGATACCATAGACAATGATGATACTATAGACCACGTAAAAGATGAAGAATTGGCCATAGAGACGAAATTACAAACTATAATATGTTCCATAGATAAAGGAAGTAAAAAATCGAATGGAGATGTCAAAAGTAAAGTTAAGAGATCTAATAAGATTGTGAAAAGATTGAAAGGGAAAACGTCAAAACGTCAAAAAGAAGACAGCAAAGTGGTGACCATAGACCTATCATACGAGGAGATGATGGAGGAGAGAGAGATGGAGTCGAAAAGAGACTCATATATGAGAGCGGAGTACAAGTGTGAGACTTGTCTTATTGGTTTTAACTACAAGAAGTCATATCAAACTCATGTTAATAGTAAACATTCTATGAGCCTAGGAGAATACATATGTCCAATTTGTAAAACAATAATATCGTCAGTTGATTCCTTTACTGCACATTATAAGAGGCACATGCGGAGATATGAATGTATAATATGTCAAAAACGCACGGCTGATCTAAAAGTGATGCAACAACATTACTTCGCAACCCACAAAATATCGCTCAAGGAATATAAATGCAATATCTGTGGGAAAATATCCAGTTCGATAGACACACATAGATACCACAAAGACACACACAAATCTAGAGTGCAGTGCACAGAGTGTGATAAAACCTTCAGGCATAGAGCCGGACTAATGAACCATAGACTCGCCGTCCACGAATTACGTAATGCGTACCCTTGCACTGTGTGTGACAAAGTGTTTAAATGGAAGACCAGCTTGAAGAGACATCTAGAGAAACACGGCAGTAAGTCAATATCAGCGTCCGCTCCGTACTGTTCTACTTGCAGCATCAGTTTCGCGTCGCTTTGTTCGTATCAGCGCCATCTTAAAAACAGCCTCAAACATGTCACGCAGGACCAGCTCAAATTCATATGTGATCACTGCAATCGCCGTTTCTCTGACAAAACCAAATTGAGAGACCATATTGAGGAGAAGCATCTATTTAAGACTTTCACTTGTCATATTTGTTCTAAGCCATCGAAGAACCGCGTAGGTTTAGACCAACACATACGCAACGTGCACAAAGGGAGACCTAAGAACAAGATGTGTCATCATTGCGGAAGAGGATTTCCTACCAAAATCCAGCTAGAATCCCACATCCGCACACACACTGGTGAGCGCCCGTTCATCTGCGAGTTCTGTCCGACCACGTTCTCTCAACAGAGCAACTTGTACAAACATAACAGACAGGTCCATATGAACATCAAATCCAAGAGATATCCTATTTGCAAGAAAAACAAAGATGTCACTGAACAAATTGTCAAGGTCACCGAACATCAAGAAAATGTTATAGAAGATACATATCGTCCTATAGTGCTGCAATATTCGCCTGAACGTGGATTCGTTCTGTGA
- Protein Sequence
- METESLCCGCLSIGRKMMRLGRGEKLQCFTQIIGEITLSKAEQPQVHLCWECYARLKNFAKFTEKVKRSYNLFSEYLKQNKPKSFLHFSPPNLTTHELYTIDIQLTEKKEAPLIEVIKTENQRQLTPEPEIKEEYDTAIPETNSDDEKLIDISKKIAKVKKKKRKRKEEVFKEVELSREELEEERRAALLAEDYVNAMFQCERCIVSFPNAEDLSDHVRLKHELDLNEYLFTDVSRPPLLTIHKTEPVNITPTDSECQGPASVNVKDELGDHSDCSKEDSIDHSKDNWLSDTIDNDDTIDHVKDEELAIETKLQTIICSIDKGSKKSNGDVKSKVKRSNKIVKRLKGKTSKRQKEDSKVVTIDLSYEEMMEEREMESKRDSYMRAEYKCETCLIGFNYKKSYQTHVNSKHSMSLGEYICPICKTIISSVDSFTAHYKRHMRRYECIICQKRTADLKVMQQHYFATHKISLKEYKCNICGKISSSIDTHRYHKDTHKSRVQCTECDKTFRHRAGLMNHRLAVHELRNAYPCTVCDKVFKWKTSLKRHLEKHGSKSISASAPYCSTCSISFASLCSYQRHLKNSLKHVTQDQLKFICDHCNRRFSDKTKLRDHIEEKHLFKTFTCHICSKPSKNRVGLDQHIRNVHKGRPKNKMCHHCGRGFPTKIQLESHIRTHTGERPFICEFCPTTFSQQSNLYKHNRQVHMNIKSKRYPICKKNKDVTEQIVKVTEHQENVIEDTYRPIVLQYSPERGFVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -