Basic Information

Insect: Herminia tarsipennalis
Gene Symbol: -
Assembly: GCA_945859575.2
Location: OX243844.1:8839875-8859120[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.086 9 8.0 1.9 2 23 570 592 569 592 0.92

2 8 0.00034 0.035 15.6 0.9 2 23 608 629 607 629 0.97

3 8 0.00013 0.014 16.9 1.1 2 23 671 692 670 692 0.97

4 8 2.7e-05 0.0028 19.0 0.2 2 23 700 721 699 721 0.97

5 8 0.00051 0.053 15.0 0.4 1 23 733 755 733 755 0.98

6 8 2.5e-07 2.6e-05 25.4 0.5 1 23 761 783 761 783 0.98

7 8 1.2e-06 0.00012 23.3 2.0 1 23 789 811 789 811 0.97

8 8 6.2e-05 0.0065 17.9 1.5 1 22 817 838 817 838 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.086	9	8.0	1.9	2	23	570	592	569	592	0.92
2	8	0.00034	0.035	15.6	0.9	2	23	608	629	607	629	0.97
3	8	0.00013	0.014	16.9	1.1	2	23	671	692	670	692	0.97
4	8	2.7e-05	0.0028	19.0	0.2	2	23	700	721	699	721	0.97
5	8	0.00051	0.053	15.0	0.4	1	23	733	755	733	755	0.98
6	8	2.5e-07	2.6e-05	25.4	0.5	1	23	761	783	761	783	0.98
7	8	1.2e-06	0.00012	23.3	2.0	1	23	789	811	789	811	0.97
8	8	6.2e-05	0.0065	17.9	1.5	1	22	817	838	817	838	0.97

Sequence Information

Coding Sequence: ATGGAAGGATTCTGTAGAAGTTGTTTGATACGGTATGATGACCCAATGGAGCTGCTTCAGTATACAGAGAAATACAGAAGATTATTTGTTTATTCTACTGGCTTACAAGTGAAGAGAAATGATGCTATTACATTCCAACTGTGTAAAGACTGTTTTTTAAATATGAGGGTAGCCTGTAAGTTTAAGAAGCAATGTCGGGCTTCTGACAAAAAGTTAAAGAGCTTCTTAGCTCTGAAAGATGTTGGCGATGGTGTGGATTTTTGCACATTCCTCAAAAATAGTGAAGATACTTCGGCTTTTCGTCTTCCATTGGTGTGTGGTAGCAGTACACCAGGTAACCAAAACAAATCAAGAGACGATGATAACGAATCAACATGTACAAGCATAAGAAATTTCATGACGGACATCTGGCAAGGTGAAGAGATGCCGGACACAGAAGCTCGTATCATTCGTGAAGTTATAGAAGAGGAGGCTGATGTGTTGGACGACTCGTTGGATTCACATTGGCTGTTGGATGATCCGTATATTGATACTGACTTCAGATTAGATTTAAGTATCAGTCCATTTGCGACGCCACATTCCGTAAATAACGACCATTGTTACACACCAAAAAGGTTTAGTGAACCTAAACAAGAACAAGAAAAAATAAAAAAATATTTCACATCTATAAGCCCTGTAAAACAAGATTACCCCGTCAACGACTTTACAGATATTATAAAAAATAACCACAGTGAAAAAGAGTTATGTGTTTTTGGTACAAGTGAAATAATTAGTGAAACGCAAGTTGATAATTTTGAAATACCAATTATCGACAATGAGAATGCAGTAAGTCATTTAGACTTACCAATTATTGTCAATGAAAAAACAATAAATGTTATAGACTTACCAAATATTGGTAATGAGAAATCAATCAATAATTTAGCATTCAGTGTTATTGATAATGGAAAATCAGTTAATAATTCAAATTTACCAATTATTGAGGAAGAGAGATCTTTGAATACTCTAGATCTACCAAGTTTACCAAGCATTGATAATGAAAGATCAATAAATAGCTTAGATTTACCAAGCTTTGATAGTGAAAAATCGATCACTAATTTAGATTTACCAAGTTTACCAAGTATCCATAATGAGAGATCGAATAATGATTTAGAATTACCAACAATTGATACTGATAATAATGAAGGAAGGATAAATACTCCAAAATTCTATATACCGACCGATGGTACAACCTATGCTACTACAAGTAAAGAAATTGAAAGATTAGTAGATAGTAAGAAATTGGATAAAGTTAAACCATGCACGATAGATAAGAATTTGGCCAAAGCATTGCAAAATGAAGATAATAAAGAATTCTCATTGGACGATTTACTAGTTTCTCCACAAGTTTTCCCTGGAGAATCAGTAGCATCCACTCCTACTATAACACACATTCTTTTTGGCGAGAAAACCCCTTTAAACCAAAATGGTTCCAGTAAAAACCTAAAGTATATAGAAAAGATGGACGAAACAGACATTAAAATATTTGAAGAATTTCTCCAAAATAATAACCAGGAGTATGATAAAGAGGATGGTGATAAAAAGGATGTACTTGATAACAAGGATGTGGATTTTAAAGTCCCAATGGATGTTGATGAAGTAGATTCTGGCCCAGAACTGTTTAAATTTTCATCTGAATTCGATGAACGCCAATTCGATTTAGAGACTTCCACTTGCAACATTTGTAATAGAAAATTCCAAAGTACGAAAGGATTAAGTTATCATTTTGCTAGGAGACATAATATTAAAATTGTAAAGCCTAGATGTAAAGCATATAAGCCAAAAGTATGTACCATTTGCGGTGCCGAATTCAGGAATGTAGCGAACTTTCATAGACATGTGAATAGACATAAGctaagctcaatggcttgtgttaggagtgggttcacCATTCGAACTCCCGACCTCACTATTGCGAGTCGGAGACATAATATTAAAATTATAAAGCCTAGATATAAAGCATATAAGCCAAAAGTATGTACCATTTGCGGTGCTGAATTTAGGAATTTAGCGAACTTTCATAGACATGTGAATAGACATAGGAAAAAAGAAGAAATGTTGATATGTGATTACTGTAATTTAGAATTCTCAACGAAACCTAAGTTAGCAATACACATACGAACCCACAATAGAAAGAATGTGAAAAAAGAACCTGGGAAGTTCATTTGCACTGTATGTGGTGCAACAAGTACTACAATTGGAAATTATAGGTTACACCAAAGGAGACATACAAATAGCTATACATATAACTGCCAGGAGTGCGGGAAAGGATTCTACAGATTGTCGGATCTCACTGTTCATATGAGACTACATACGGGAGAGAAGCCGTACGCTTGTGTACATTGTGATAAAAAGTTCGCGCGAAAGGACGCCCTTACCAGACATATCAAATATCATATTAATGACAAGCCATACAAATGTGAACACTGCAACTTAAAATATACAGTGAGGAGTCAACTAAACGCACACTTAAGAAAGTCACTGGCATGCAAGAAATTACGTGGCATTCCGGTAGATGAGTACATGCTAAATAAGAAAAAGAAAGGAACATCGAAAAAGACGACTGTTGAACAGATTGAAATTGAGGATGGAGGGATAGAGATGGATAAAGAAAAGACTGAGACAACAAATAATATTGAAATCGTAAATCAGTTGCCGTATTTAGATACTGAAATGAGTAATTAA
Protein Sequence: MEGFCRSCLIRYDDPMELLQYTEKYRRLFVYSTGLQVKRNDAITFQLCKDCFLNMRVACKFKKQCRASDKKLKSFLALKDVGDGVDFCTFLKNSEDTSAFRLPLVCGSSTPGNQNKSRDDDNESTCTSIRNFMTDIWQGEEMPDTEARIIREVIEEEADVLDDSLDSHWLLDDPYIDTDFRLDLSISPFATPHSVNNDHCYTPKRFSEPKQEQEKIKKYFTSISPVKQDYPVNDFTDIIKNNHSEKELCVFGTSEIISETQVDNFEIPIIDNENAVSHLDLPIIVNEKTINVIDLPNIGNEKSINNLAFSVIDNGKSVNNSNLPIIEEERSLNTLDLPSLPSIDNERSINSLDLPSFDSEKSITNLDLPSLPSIHNERSNNDLELPTIDTDNNEGRINTPKFYIPTDGTTYATTSKEIERLVDSKKLDKVKPCTIDKNLAKALQNEDNKEFSLDDLLVSPQVFPGESVASTPTITHILFGEKTPLNQNGSSKNLKYIEKMDETDIKIFEEFLQNNNQEYDKEDGDKKDVLDNKDVDFKVPMDVDEVDSGPELFKFSSEFDERQFDLETSTCNICNRKFQSTKGLSYHFARRHNIKIVKPRCKAYKPKVCTICGAEFRNVANFHRHVNRHKLSSMACVRSGFTIRTPDLTIASRRHNIKIIKPRYKAYKPKVCTICGAEFRNLANFHRHVNRHRKKEEMLICDYCNLEFSTKPKLAIHIRTHNRKNVKKEPGKFICTVCGATSTTIGNYRLHQRRHTNSYTYNCQECGKGFYRLSDLTVHMRLHTGEKPYACVHCDKKFARKDALTRHIKYHINDKPYKCEHCNLKYTVRSQLNAHLRKSLACKKLRGIPVDEYMLNKKKKGTSKKTTVEQIEIEDGGIEMDKEKTETTNNIEIVNQLPYLDTEMSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -