Basic Information

Insect: Herminia tarsipennalis
Gene Symbol: -
Assembly: GCA_945859575.2
Location: OX243850.1:6401925-6404887[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 9e-06 0.00094 20.5 5.8 1 23 285 307 285 307 0.97

2 11 0.00064 0.067 14.7 1.1 1 23 313 336 313 336 0.95

3 11 4.4e-05 0.0046 18.4 0.5 1 23 348 370 348 370 0.98

4 11 0.0037 0.38 12.3 2.1 1 23 377 399 377 399 0.97

5 11 0.00079 0.083 14.4 0.8 1 23 405 427 405 427 0.99

6 11 2.6e-05 0.0028 19.1 0.7 1 23 433 456 433 456 0.98

7 11 0.0027 0.28 12.7 1.4 2 23 462 481 461 481 0.97

8 11 1.3e-05 0.0014 20.0 0.8 1 23 487 509 487 509 0.97

9 11 0.00019 0.02 16.4 1.1 1 23 515 537 515 537 0.96

10 11 0.00015 0.015 16.7 0.4 1 23 543 566 543 566 0.96

11 11 0.24 25 6.6 1.5 1 22 572 593 572 593 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	9e-06	0.00094	20.5	5.8	1	23	285	307	285	307	0.97
2	11	0.00064	0.067	14.7	1.1	1	23	313	336	313	336	0.95
3	11	4.4e-05	0.0046	18.4	0.5	1	23	348	370	348	370	0.98
4	11	0.0037	0.38	12.3	2.1	1	23	377	399	377	399	0.97
5	11	0.00079	0.083	14.4	0.8	1	23	405	427	405	427	0.99
6	11	2.6e-05	0.0028	19.1	0.7	1	23	433	456	433	456	0.98
7	11	0.0027	0.28	12.7	1.4	2	23	462	481	461	481	0.97
8	11	1.3e-05	0.0014	20.0	0.8	1	23	487	509	487	509	0.97
9	11	0.00019	0.02	16.4	1.1	1	23	515	537	515	537	0.96
10	11	0.00015	0.015	16.7	0.4	1	23	543	566	543	566	0.96
11	11	0.24	25	6.6	1.5	1	22	572	593	572	593	0.96

Sequence Information

Coding Sequence: ATGGCTAACGTAAAACGTAGATTAAATGCACCCAAAAGTGCACCAAAACCTAAAAAGAAGTGGCCCGATGGTCGTAGCAAAAGAGGGTTAAGATCATTACGGGCTGTGATTGATATTAAAACCACTGATGATAGCGGAAGTAATGATAGAGACAATGGTGTTGTCAAGAAACGTGCAGCCAATGATAATTTATTGATTCTAACTCCAGATGAGAAAGTTCAATATTTATTACAAAATGGACGTAAACTCAAAGATACATTTGATGCTAAAGCATCTCTGCAAAATGGACATGTACACAACTATAACACCAAGTCTAAAAGTGGCAAAATTAAAAAAACTAAAATTACTAAACCTACACCTGACTTGCCTGGTCTCGTGAAAAATGACAGGGGACTCCTAGAAGGTGTCACAAATAAGTACAAGTATTTAAAAATCATGGATAAATTAATAATGAGTGAATTTGGTCTACCAAACACACACAAAAAATCTAAAGGAACTATTTCTAGAAGAAATGGAACAAACAATAATAATGATAGTGAAATTACAGACCAAAATAATAAAATAACAGACAAAAACAATAAAACAAATGCCAAAAATACCAAATCCCCTGTTAAAAATAAGAAAACTGTCAGTGTAGATGTACAAGTTCCTGAAAATGTTGCACCGGCTTTAGATCAGTCAAAACATAACAAACAACAATCTGAACTAGTCAATTTTGCAGATGAGCCAAAACCGCAATCTCCACCACCACTACGCAGGAAAGGCAGACCAAAAAAGATCCCAAAGTATGGAAAAACACCTAAAACAAAACAAGTTGCTCTACCAAATGGTGTAATCATAACATTACCATTATATGAGTGTGACTATTGCCATAAAACATTTAATAGGAAACATTCACTAGTGAGGCACATTTACCTCCATCTCGGCAGGAAACCTCACTCTTGCCCAGTTTGTCCAAAAAAGTTCCGTATTCTGAAGAACATGAAAGTTCATTTGGACAGAGACCATTGTGTTCAAAATGTTGATGAAAGTACTGAAACATATTCATGCAATATCTGTGACAAGCCATTTTTAACTAAAGAAAATTTAAACTTACATTTGACGAGTCATGTAAAAGGGGAAAATTCATTTAAATGTATTTATTGTGATAAGAAATTCTCTTACCAACTGTTGTTAGTTCAACACGAAAAGAAACACTTAGTTACAGGAAAATATCAATGTACATTATGTGACGTGAAGTATGATTCACGGGATAAACTATATGTGCATGTAAAGAGCCATTTGAAACTTGCTGATTACATTTGCCAGTATTGTGGCAGAGAGTTTTTAAGAGCTAATTCATTGAAGCGTCATATTCAGACAATGCATGTAGGCCGTACAATACAATGCCCAATTTGTAACAAGAATCTAAAGGGGCATCTCACTGAGCATATGCGGACACATGACAAAAAACGGCCTCATGAATGCCCTGATTGTGGTAAATTATTTGCACAGTCAACTCAAATGAAGGTTCATCGTCGTGGCCATACTGGATATCGTCCATACTTGTGCAGAATTTGTGAACGACCTTTCTCTCATTCAAATGCTCTAATGTTGCATGTTAGACGTCATACAGGTGAGAAACCGTTCCCATGTGCCGAGTGCCCTATGTCCTTCTCTCAATTACCACATATGAAGGCACACATGTTTAAGATTCACAGCAAAATAAATCCATATAAATGTTTGAAATGCAATGACTATTTTAAGTTGAAAAAAGACCTCATCATTCATAAGAAGACATGCAATGGCACCGGTATTGATATTGATTTATACGGAGACGAAAGACCATTTGAAGATGGATTACAAGATGATGATGCTGTTGCTGTTAAATCAACTATGACCTTATCGCGAATGAGGTTCCTATTGGCTCTTCTGCTGACGATGATTGCTACCAAAGAAAAGCTCAAATATTTAGGTTTCAACAAACGTCTTGTTGATGACTTATTGATCGAGTCGTTGGAGGCGATGGACCAAATCCCTTGCTTGGACGAGAGTCTATCTCCACTGATACGTCTTCGAACCAACATTGAAAAGTTGCTAAAAGGAACAGTACCATCGAAACAGATGGAAAAATTCAAGAAAGAAAACAAGTCCACTGAAGAACTCCTGGAGCTCTTGACGAGTGAGAAAGATAAGTAA
Protein Sequence: MANVKRRLNAPKSAPKPKKKWPDGRSKRGLRSLRAVIDIKTTDDSGSNDRDNGVVKKRAANDNLLILTPDEKVQYLLQNGRKLKDTFDAKASLQNGHVHNYNTKSKSGKIKKTKITKPTPDLPGLVKNDRGLLEGVTNKYKYLKIMDKLIMSEFGLPNTHKKSKGTISRRNGTNNNNDSEITDQNNKITDKNNKTNAKNTKSPVKNKKTVSVDVQVPENVAPALDQSKHNKQQSELVNFADEPKPQSPPPLRRKGRPKKIPKYGKTPKTKQVALPNGVIITLPLYECDYCHKTFNRKHSLVRHIYLHLGRKPHSCPVCPKKFRILKNMKVHLDRDHCVQNVDESTETYSCNICDKPFLTKENLNLHLTSHVKGENSFKCIYCDKKFSYQLLLVQHEKKHLVTGKYQCTLCDVKYDSRDKLYVHVKSHLKLADYICQYCGREFLRANSLKRHIQTMHVGRTIQCPICNKNLKGHLTEHMRTHDKKRPHECPDCGKLFAQSTQMKVHRRGHTGYRPYLCRICERPFSHSNALMLHVRRHTGEKPFPCAECPMSFSQLPHMKAHMFKIHSKINPYKCLKCNDYFKLKKDLIIHKKTCNGTGIDIDLYGDERPFEDGLQDDDAVAVKSTMTLSRMRFLLALLLTMIATKEKLKYLGFNKRLVDDLLIESLEAMDQIPCLDESLSPLIRLRTNIEKLLKGTVPSKQMEKFKKENKSTEELLELLTSEKDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -