Htar030218.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- Zfa_1
- Assembly
- GCA_945859575.2
- Location
- OX243853.1:6201809-6218932[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0001 0.011 17.2 1.9 1 23 164 186 164 186 0.98 2 11 0.0029 0.3 12.6 0.4 1 23 193 215 193 215 0.98 3 11 1.2 1.3e+02 4.4 1.3 1 9 219 227 219 242 0.83 4 11 0.00061 0.063 14.8 1.4 1 23 249 272 249 272 0.96 5 11 0.00024 0.025 16.1 0.4 2 23 279 301 278 301 0.95 6 11 3.7e-05 0.0039 18.6 1.0 2 23 315 336 314 336 0.93 7 11 0.00011 0.011 17.1 0.5 1 22 342 363 342 367 0.94 8 11 4.8e-05 0.005 18.3 2.5 2 23 376 398 375 398 0.96 9 11 4.3e-05 0.0045 18.4 0.5 1 23 404 427 404 427 0.97 10 11 7.5e-06 0.00079 20.8 0.3 1 23 436 458 436 458 0.99 11 11 0.015 1.6 10.4 0.2 1 19 464 482 464 487 0.89
Sequence Information
- Coding Sequence
- ATGGATGAAACATTAAAATCAGTGAGAATGCAAACACAACCTCTAGTCAATTTGAAACATGTGTCATATGATGTGTTGGAGCTGTCAGAGAAGGACGGCAATAGTTTTGAAGAGTCCTTCTCCGTAGTCAGTAATAGGAGAGTGAGAGATGATGTTAAAGTCAAGATTGAGATGAAGGAAGAAGATTTACTTGATAATTTGGAAGCTGAGTTTGTTAATGGAGATGATGAATTCCCAGAGATGTATGTCAAAGAGGAGGACGAATTTCCCTTGAACGCTATACTGAAAGAAGAATTAGAAATAGATAACCTTATGAATCTTAGCACAACATTAAAGAAGAAACTAAAGAAAAAGGCAAAAATCAGAAGTGAAAATGCTAGGAAATTGAGAAGAGAAATGCCCGAAATAAAAACAATATACATAACAAGAAAGCAATGTATGGAGGAGCGAACAAGGACATTGGAGAATGAAAAGTACTTGAATTGTACATTTAAGTGTACTGACTGTGTCAAAGGATTTACTTTTAAAGGCAGCTATGATAAACACATGGAGAAACATAATCAGTGCATGGGGGATTACGAATGCGATATTTGCAAACAAAGAATGGACTCTGAAGACAAACTAGTCAGTCATATGAGGTATCATTTGGTTCGATACAAATGTCCAGAATGTGGATTAACCCGTAACTGCCGGATGACAATTAAGGATCACTACTCAGCGTACCACCTCGGGGCCGATCATCAATACAATTGTATGCAATGTATGAAGGCTTTCAAGCGTCAGGTGTCTCTACGCAAGCACGTGAAATACGCGCACGGTGTAAAGGAGCGCGTGCAATGCGCATACTGTAACCGGACTTACGCAAACAAAGTTGTGCTCAAGTCGCATATGATGCTAAAACATGCCAAAGAAGTATCAGCAGTGGAGGTATTCAAACGATGTGTTTGTACTGAATGTGGAATAGGTTTTAAGACCCCCTCACAACTACGGAGCCACAGCGTCAAACATTCTGAGACTAGGAACTATTACTGCGTCGAGTGTGACAAGAGTTTTAAATCGGAATCCATATTGAAAAACCATTTAAAGACTGCATCAATTCATGTCAATTATAAAGAATTACCGTTGTCATGTCTACACTGCGAGAAACGTTTTTCTAATCGTCGAGACGTGGAGCGACATATGAACAGAGTACATCTAAATGTTAAGCCCTACCGATGCGATAGatgtgacaagGCATACGTGAACTCTTGGGCGTTAAAAGACCACAAGAGATACATCCACGAAGGTTACAAAAGACCTTTGCAATACCCTTGTCCAATGTGCGACAAAATATTTGATAGAAACCAGATCCTCAAAAGTCATATCCGCACTCACACTGGTGAGCGGCCATACCAGTGCAGCAAGTGTCCCGCTCAGTTCAGCCAAGCTAGCATATTGCGGACACACGACCGACTGATTCACCTCAAACTTACTAGAGATGGGAGACCTAAGGCTGGCGCATTAAAGTAA
- Protein Sequence
- MDETLKSVRMQTQPLVNLKHVSYDVLELSEKDGNSFEESFSVVSNRRVRDDVKVKIEMKEEDLLDNLEAEFVNGDDEFPEMYVKEEDEFPLNAILKEELEIDNLMNLSTTLKKKLKKKAKIRSENARKLRREMPEIKTIYITRKQCMEERTRTLENEKYLNCTFKCTDCVKGFTFKGSYDKHMEKHNQCMGDYECDICKQRMDSEDKLVSHMRYHLVRYKCPECGLTRNCRMTIKDHYSAYHLGADHQYNCMQCMKAFKRQVSLRKHVKYAHGVKERVQCAYCNRTYANKVVLKSHMMLKHAKEVSAVEVFKRCVCTECGIGFKTPSQLRSHSVKHSETRNYYCVECDKSFKSESILKNHLKTASIHVNYKELPLSCLHCEKRFSNRRDVERHMNRVHLNVKPYRCDRCDKAYVNSWALKDHKRYIHEGYKRPLQYPCPMCDKIFDRNQILKSHIRTHTGERPYQCSKCPAQFSQASILRTHDRLIHLKLTRDGRPKAGALK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -