Htar032270.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- -
- Assembly
- GCA_945859575.2
- Location
- OX243854.1:17263773-17265152[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.5 2.6e+02 3.4 0.2 4 16 50 62 50 64 0.83 2 11 0.0062 0.65 11.6 0.3 1 23 146 169 146 169 0.91 3 11 0.019 2 10.1 0.4 2 23 195 217 194 217 0.94 4 11 0.00053 0.055 15.0 0.5 1 23 239 261 239 261 0.97 5 11 3.6e-06 0.00038 21.8 0.1 1 23 265 287 265 287 0.98 6 11 0.00028 0.029 15.8 0.3 1 23 292 315 292 315 0.95 7 11 2.6e-05 0.0027 19.1 0.5 2 23 322 344 322 344 0.97 8 11 4.8e-05 0.005 18.3 1.2 1 23 351 374 351 374 0.98 9 11 0.0003 0.032 15.7 3.0 2 23 381 402 380 402 0.97 10 11 6.8e-07 7.1e-05 24.1 0.9 1 23 408 430 408 430 0.98 11 11 0.00066 0.069 14.7 0.0 2 23 434 456 434 456 0.95
Sequence Information
- Coding Sequence
- ATGAAAACTGAAGACGGAGAAGAAATAAAACTTACTTTACTTAAACACCCTATTTCTTTAGATAACTTAATGTTTGAGGAAGAAAAGAAAGATACTAATAATAAAATAATAATCAAAAAGAAACTTGGGAAAGTCCATAAGATAAATAACGATTGTGATAAGAAATTCATCAAAAAATTCAACGTAAATCAAGATTTGAAAGTTGGGAAGTTATCTTTACTGAAAGAGCCATTGTCTTTAGATAATATTGATTGGAAGAATGAACGCGATGAGGTTCAAAGTTCGGTTACATTTAACGTGAAGACTGTGCAAGGATTTTTATGTAGTCCTCCTAAAAGGAGAACAAAATTCGACGAATCCCAATCTTGGAAACAAAATGCTTTGGTCATCTTCGAATTTTCATTCGTATATCCATTCATTCATGCTGGCAATAAGTACAAATGTTTTATTTGCTCGAAGCCTTTCTTAGATGCTAGTCAACTAAATGGTCACACAGTAAATGAACACAGTATTAAAGAAATGAGAAGGGAACTTAATAACAGAGTCCGAGACACAAACTTGAAAGTAGACGTCACTTATTTACAATGCAGAATATGTTTGCAAACATTATCAAACTTACAAAGTTTAAAAGTACATTTAAAAGATGACCATAACAAAAAGATCGACCCAGATTTACAAGACAATATCATCCCATTCAAATTAGGAGGCGAAAATTTTGATTGTCAGATTTGTGGTGAACGATATTTTAAACTTAGACTTCTTATAATACATATGAGTAAACATTTTAATAATTACAGCTGTGAAATTTGCGGGGCCGTTTTCATATCACTTACGTTACTAAAAAGACATTTACAAATACATGAATCTGGTAGTTTCCCTTGCGATAAATGTGATAAGATATTCAGTAATGCTGCTAAAAGGACATTGCATACACGAGGAGTTCATCTAAAACAGTTTCCACGAAGATGTCCCATTTGTCCGGAAAGGTTTAACTCAAATTATCAAAGAACTAAGCATTTGCGTGTAATTCATAATCAAACGAATGGTTTATTTAGATGTGATACTTGTGGACGAGAATACGACTTGAAATATCACTTGCTAATACATATAAGATCTGTTCATTTACAAGAAAGGAATCAAGAGTGCCCTGTGTGCCACGCAAGATTTTTTTCCAAGTACTGCCTCTCAAGACATATGATCATACATTCAGGGGAAAAGAATTTCAAATGTGAGGTGTGTGGGAAAGCATATGCAAGAAGAAAAAACTTGAGAGAACATTCTCGATCTCACGAAGTTGGCGTGTGTTCGATTTGTGGTGAAAACTATGGCGATCAAAATAATTTAATCATCCATGTAAACAACGTTCATGGAGTTATGTAA
- Protein Sequence
- MKTEDGEEIKLTLLKHPISLDNLMFEEEKKDTNNKIIIKKKLGKVHKINNDCDKKFIKKFNVNQDLKVGKLSLLKEPLSLDNIDWKNERDEVQSSVTFNVKTVQGFLCSPPKRRTKFDESQSWKQNALVIFEFSFVYPFIHAGNKYKCFICSKPFLDASQLNGHTVNEHSIKEMRRELNNRVRDTNLKVDVTYLQCRICLQTLSNLQSLKVHLKDDHNKKIDPDLQDNIIPFKLGGENFDCQICGERYFKLRLLIIHMSKHFNNYSCEICGAVFISLTLLKRHLQIHESGSFPCDKCDKIFSNAAKRTLHTRGVHLKQFPRRCPICPERFNSNYQRTKHLRVIHNQTNGLFRCDTCGREYDLKYHLLIHIRSVHLQERNQECPVCHARFFSKYCLSRHMIIHSGEKNFKCEVCGKAYARRKNLREHSRSHEVGVCSICGENYGDQNNLIIHVNNVHGVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -