Htar032388.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- -
- Assembly
- GCA_945859575.2
- Location
- OX243854.1:19117968-19122701[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.14 15 7.3 0.9 1 23 38 61 38 61 0.94 2 26 0.46 48 5.7 1.2 2 23 90 112 89 112 0.89 3 26 0.11 11 7.7 0.4 2 23 135 158 134 158 0.91 4 26 0.021 2.2 10.0 0.3 2 22 160 180 159 180 0.92 5 26 0.13 13 7.5 0.6 2 23 184 206 183 206 0.94 6 26 0.00022 0.023 16.2 1.4 2 23 211 233 210 233 0.96 7 26 0.00049 0.051 15.1 0.6 2 23 240 261 240 261 0.95 8 26 3.9e-06 0.0004 21.7 0.8 1 23 267 289 267 289 0.98 9 26 2.2e-05 0.0023 19.3 0.6 1 23 295 317 295 317 0.96 10 26 0.00061 0.064 14.8 2.8 1 23 323 346 323 346 0.92 11 26 0.011 1.1 10.8 1.4 1 23 463 486 463 486 0.95 12 26 0.32 33 6.2 0.7 2 23 517 538 516 538 0.94 13 26 0.0013 0.13 13.7 3.4 1 23 559 582 559 582 0.97 14 26 0.0043 0.45 12.1 0.1 1 23 587 610 587 610 0.92 15 26 0.00029 0.03 15.8 0.8 1 23 615 638 615 638 0.96 16 26 0.94 98 4.7 0.7 2 23 644 666 643 666 0.92 17 26 0.18 18 7.0 4.7 1 23 714 737 714 737 0.96 18 26 0.013 1.3 10.6 0.2 2 23 765 786 764 786 0.96 19 26 0.036 3.7 9.2 2.0 2 23 809 831 808 831 0.94 20 26 0.00017 0.017 16.6 0.8 3 23 838 858 836 858 0.97 21 26 0.0012 0.12 13.9 1.7 1 23 865 888 865 888 0.96 22 26 0.026 2.8 9.6 0.5 2 23 892 914 891 914 0.96 23 26 0.0029 0.3 12.6 1.8 1 23 921 944 921 944 0.97 24 26 0.52 54 5.6 0.1 2 23 951 972 950 972 0.94 25 26 3.3e-05 0.0034 18.8 2.6 1 23 978 1000 978 1000 0.98 26 26 7.2e-06 0.00076 20.8 1.6 1 23 1006 1028 1006 1028 0.99
Sequence Information
- Coding Sequence
- ATGGGCAGCGTAAACAACGGCTCAAAACCTCCAAAAACCAAAATAAAATCCTACCTTATAACAATACTACAAAAGACCACCGCCGTGCCCTTTAGTCCATACGAAAACAAATATAAATGCTTTTACTGCGAAAACATATTTATTCTTTTTTCTAAACTGAGAGAGCATACGATTCAGGCTCACAAACTTGTAGACTTCGATGAGACTTTAAAAATCTGGTCGGAATTCAATTTAGATTCAAATTTAATGTTGGATATTCAAAATTTACATTGCAGGGAATGTAATAAACCAATATCTAACATGAACGATTTAAAAATACACTTTAGCGAAAGGCACGACGAAATTATACCAAAAGACATTTGTAACAACGTCATATGTTTTGAACTATCCGACGATTCTATGAAGTGTTTCTTATGTGAAAAAGAATTCGCGCTATTTCAGACTCTAGTAGAACATATGAAATCAAACCCTCATCTTACTTGCCAAACTTGTGGCGAGAGTTGTAGTAACGAAGGAGATTTTATTGAACATGAAAATACTTTTTGCAAACCTTGCAAACTCTGCGACATAAGATTTCAATCAAAACAGCAAAGGGCTGATCATTTAAAACTCGTTCACTGCAAAGGAATCCAGTGTGACTTTTGCTTAGAACAGTTTACGCATAAAGAGGCTTTAAAACGCCATATCCGAAACATTCATTACAAAGAAAAAAATCGAACGTGTGATATTTGTGGGAAAACTTTCTTTAATACTGGATACTTGAATTTGCACAAAGTTAGTCATCGCAAGATAAAACCCTTCGAATGCGACATTTGCAAGAAGAAATTTGCAAGAAACGAGGCATTGAAACTACACAAACGTATTCATAATAATGATAGAAGATATGTTTGCAAAGTTTGCGGCAAAGCGTTTGTGCAGTGGTGTTCTTTAAATATGCATAAAGTAGTTCATACTACTGAAAGAAATTTCAAGTGTCCTATATGCGATAGGGCGTATAAAGATAAGAAAACTATGGAGAAACATTGTAGGAATGTGCATCAGAAAGAAGATTTGAGGAAACAGTCAAAGTTGTTATGCGAAAAAAGAAAGAGGAAGAAACAGACCGTTGAAGAAAGCTACGAAGATATTTATGTTACACACGGAAGTAGGCTACGGAATATGGTATACGATGATGATGATTATGATGATTCAGATAATGATTTCTTGGTTATAGATGAAGCAATAAAGCCGACGAGAAAAACCGTTGACAAAACAAAGAAAAAGACAGTTGAAAAACCTAATAAAAAGACTGGAGTTGAAGAAGAGGCTAAAAAAGACACTCGCCATCTCTTAACAGTCATCATAGAGACTTCAACGGCAATGCCGTTCCGGAAAAATGGGAATACCTACAGATGCTTTTACTGTGAAAGCGACTTTTATTACGCCTCAGAATTGAAAACTCATACTCTAAACGAACACAACAATGAAACTAAAAGACAATTAAAACAAACAATCAATAAAAATGTTGTCAAGAAAAATCTTTTAGTCAAATTAGACGTAACAGAACTATCTTGCAAAATATGTTTAGAATCTTTTGAAAATCTTCAGGACCTCGTATTCCATTTTCGCAAACACGATAAAGTCGTGACTGAAAATTTAGACAATATGTTATGTTTAAAGTTGTCAGATAAGGAGTTCAAATGCTTATATTGTGACAAAGAGTTTGCGTACTTCAAAAATCTGTACATACATCTTCACAGAGAGCATGTAAAAAGACGTTTTATATGTGAAGCTTGCGGTCTCAATTTTACTACTAACCAAGGTTTAAACAATCATACGGCATACGTCCATAATCAGGGCAGTTTTGCTTGTCCTGAGTGTGGTAAAAAATTCGCTGCTCAACATCTCCGAAGCGCTCACATGAAGCGGTCACATGATGCTGAAAATTCAAAATGCCACGTTTGCAAAGCGGTGTTCGGTAGCATCAATCAAAAAGCAACACATTTGGCAAAAGAACACAATATTTGGATTTCAAAAGCGTTTAAATACGCGCAGAAGAAAAAGGACATCAATTTGGAGATGATGAAAATGACACGTCTGCTACTTGTAGATATTCTAGAAAACACAACAGCCATGCCTTTCAGGAAGATGGGTCAGTGTTTCAGGTGTTACTACTGTTCTACAAACTGCTATTTTGCATCGGAACTTAGAACTCACTATGCAAGTAAACATCAAAATGAAAATATCAAACTATGGGTCAAAAGAAATGTTACACGGAGAGCTATATTAGTCAAGTTAGATATAACTGACCTTAGTTGCAAAATATGCTCAAAAAATCTTGAAAATCTACAAGACTTTGCCGTACATATACGAGAACATGACAAGAAAATAGCAAGCGAAGAATTTGACAATATCGTTTGCGTCAAACTAACAGACTATCATCTGAAATGCACGTATTGTGTTAAAGAATTTTCATTTTTTCCTCAATTATATTCACATATACATCAGGAGCATTTGAAAAAGAATTCGATTTGTCCAACTTGTGGCTTATGCTTTGCAGATGATCGTAGTTTAAGTAGTCATATTAGAAAACATGTTGATAAGAAAACAACATTTGATTGCACCGTTTGTGATCGGAAATTTTACACTGCGATTAATCGTTCTAAACATATCAAACGTACACATGGAAATAACAAATGCACCATATGCGGACTTACACTAAGAAGCGAATTCCAAAAAGAAAATCACATGGCTAAAGAGCACGACTTTTATATAAGAGAATTCAAATGCGATCGATGTCCTAGAAAGTTCATATTAAACAAATTCCTAGTAAAGCATATAAAAAATCAACATTTGAAAGAAAAAAACAAATCGTGCGATGTGTGTGGCGCTAGGTTTTTTGACGTAGCAATTTTAAACCAACATAAAATTACTCACAGTGATGAAAAACCGTTTGAATGTGGTACTTGCAATAAGAAATTCGCTAGAAGGAAGACATATCGTCAACATTTAAGGATTCACGCAGACGAACGTAACTACGTCTGTAATGAATGCGGAAAAGCTTATGTGCATCACAGTGGGCTCGTGTGGCATAGGAAAACTCATGAAAAGAATAAGGGCAACCAAACACAAAGCGGAGAAACGCCAGAGAGTTCTGTTTTAAGTTCTTGA
- Protein Sequence
- MGSVNNGSKPPKTKIKSYLITILQKTTAVPFSPYENKYKCFYCENIFILFSKLREHTIQAHKLVDFDETLKIWSEFNLDSNLMLDIQNLHCRECNKPISNMNDLKIHFSERHDEIIPKDICNNVICFELSDDSMKCFLCEKEFALFQTLVEHMKSNPHLTCQTCGESCSNEGDFIEHENTFCKPCKLCDIRFQSKQQRADHLKLVHCKGIQCDFCLEQFTHKEALKRHIRNIHYKEKNRTCDICGKTFFNTGYLNLHKVSHRKIKPFECDICKKKFARNEALKLHKRIHNNDRRYVCKVCGKAFVQWCSLNMHKVVHTTERNFKCPICDRAYKDKKTMEKHCRNVHQKEDLRKQSKLLCEKRKRKKQTVEESYEDIYVTHGSRLRNMVYDDDDYDDSDNDFLVIDEAIKPTRKTVDKTKKKTVEKPNKKTGVEEEAKKDTRHLLTVIIETSTAMPFRKNGNTYRCFYCESDFYYASELKTHTLNEHNNETKRQLKQTINKNVVKKNLLVKLDVTELSCKICLESFENLQDLVFHFRKHDKVVTENLDNMLCLKLSDKEFKCLYCDKEFAYFKNLYIHLHREHVKRRFICEACGLNFTTNQGLNNHTAYVHNQGSFACPECGKKFAAQHLRSAHMKRSHDAENSKCHVCKAVFGSINQKATHLAKEHNIWISKAFKYAQKKKDINLEMMKMTRLLLVDILENTTAMPFRKMGQCFRCYYCSTNCYFASELRTHYASKHQNENIKLWVKRNVTRRAILVKLDITDLSCKICSKNLENLQDFAVHIREHDKKIASEEFDNIVCVKLTDYHLKCTYCVKEFSFFPQLYSHIHQEHLKKNSICPTCGLCFADDRSLSSHIRKHVDKKTTFDCTVCDRKFYTAINRSKHIKRTHGNNKCTICGLTLRSEFQKENHMAKEHDFYIREFKCDRCPRKFILNKFLVKHIKNQHLKEKNKSCDVCGARFFDVAILNQHKITHSDEKPFECGTCNKKFARRKTYRQHLRIHADERNYVCNECGKAYVHHSGLVWHRKTHEKNKGNQTQSGETPESSVLSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -