Htar014588.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Herminia tarsipennalis
Gene Symbol
-
Assembly
GCA_945859575.2
Location
OX243839.1:23919689-23934017[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.032 3.4 9.3 0.6 1 23 4 26 4 26 0.97
2 20 8 8.3e+02 1.8 1.6 3 23 49 69 49 69 0.94
3 20 0.00056 0.059 14.9 0.1 1 23 90 112 90 112 0.93
4 20 0.058 6.1 8.5 0.3 5 21 120 136 117 137 0.93
5 20 4.1e-05 0.0043 18.5 0.1 1 23 206 229 206 229 0.97
6 20 9e-07 9.4e-05 23.7 0.8 1 23 235 257 235 257 0.98
7 20 0.0024 0.25 12.9 6.8 1 23 263 285 263 285 0.97
8 20 9.2e-07 9.6e-05 23.7 1.4 1 23 291 313 291 313 0.99
9 20 7.8e-06 0.00081 20.7 0.4 1 23 319 341 319 341 0.99
10 20 3.8e-06 0.0004 21.7 1.0 1 23 349 372 349 372 0.96
11 20 1.3e-06 0.00014 23.2 1.1 1 23 378 400 378 401 0.95
12 20 0.00054 0.057 14.9 0.1 1 23 408 431 408 431 0.96
13 20 0.04 4.2 9.1 5.9 1 23 437 459 437 459 0.97
14 20 0.044 4.6 8.9 2.2 1 23 465 488 465 488 0.97
15 20 0.0026 0.28 12.8 0.7 2 21 492 511 491 512 0.92
16 20 9.3e-06 0.00097 20.5 0.1 1 23 544 566 544 566 0.97
17 20 3.9e-06 0.0004 21.7 2.9 1 23 571 593 571 593 0.99
18 20 0.0063 0.66 11.6 1.9 2 21 597 616 596 617 0.94
19 20 0.058 6.1 8.5 0.2 3 20 626 643 624 645 0.93
20 20 1.1 1.2e+02 4.5 0.2 2 23 659 680 658 680 0.88

Sequence Information

Coding Sequence
ATGGAATTTCACAAATGTTTAGAATGTTCAAAGGCATTCCTTGATATTGATGAACTCGCTACACATACAAAACTTCATCAGGAAATGCATCTGGCTTATGCCCTCAGTGCTTATGTGAAGTTGAAGAAAGATAAGATATGGGGCTGTGATCGCTGCCACCGTGGTTTCTTGAGTGAAAGACTGCTTCTACTACATAGGCTAGAACATGTTAGAAAATCTGTAAACCCCATACAGGATATATACTACAATAAAGATAAAGAAAAACCATACAAATGCCCTGAGTGTGATTATGCATTTGTGGCCCAAAGCACCCTCGACACCCATTCAGTTATCCACAAACCATTCCCACATATCTGCTATTGCGGCATTGGCTACTACAAGCAAGAAGACTTGCGAAGACACCAAAAATTACTACAATGCCAAAAACCACAAATCAAAGACACAAAACCCCCAAACGGGTTAATAAAGTCAGAAGCAAAAATAAAAACCAGTTCCATAATAAAAAAAAAGAAAAAGAAAGCAAATGTTCCGAAATCGAAATCAAGACTAAATAATTGCATTCCCCTACCATTGCCGCCATTGGATTTAAAGATTAAGAAGATTGGTGATAGGAAATATCAGTGTCCTGAGTGCCTTAAAGTTTTTGTCGAAAAAGCAAACGTTGAAAAACACTACCGCGCAGTACATAGAGGAGAACGCCCGTACCCTTGCCATCTATGTGAGAAAAAGTTCACTCAACCTAGTGCACTAAAACAACATCTAATAATACATTCTGGCGTTAAAGAACATGAGTGCAAGTACTGCGGGAAAACATTTTCAAGTTTCCATTCAAAATCCCTTCACGAGCGTACTCATACGGGTTATAAACCATACAAATGCTCATATTGCTCTCAAACGTTTAGTGACCCCAGTGCCTACAAACGACACGAAAGAATTCACACGGGAGATTTTAAGTATAGGTGCGAACAGTGCCCTATGGCATTCACAGATAGCAGCGGGTTATATGCTCATAGAAAACGACATAAACCTGAAGAGGCACGCAAGTACGCATGCAATGAATGCGATAAAAAGTTTTATAACAAGTCATTTCTTAGTAAACATATTTCGGTTGTTCACAATAAAGAGTACAACTTCCCATGTGAGATATGCGAAAGGAAATTTAGTAATAAAACTAATTTAATAAATCACATTAGTATACACCACGTTCCCATTAGAAAGACATATCCATGTAACATATGTGGTAAAGTTCTTATGGGAAAAACTTATCTGAATATACATATTGATAGAGTACACAAAAGAAAAACAAGGCATACTTGTGAATTTTGTAGCAAAAAGTTCTACAGTAAATGCGCTTTTAGTAATCATTTGGCTATTCATAGCAAAATAAAAAAATACGAATGTGATTATTGTTCTTTAAAGATGCGCATCAGAAGTGATCTCCATAAACATATTATGTCAAAACATATAGGAATTCGTTGTAAGATATGTTCACGATATTTTCCTAGCCGAAGCAGTTTGGACAAACATAAACTGAAAGAAAGTGAAAAATGCAATTTTTGCGAAATGGAATTCTTCTGTGAAAACTCATTAAAATCACATTCACTAGTTCATTTTAAGGAACAAAAAACTTATGAGTGCGATTATTGCGGTGAAGTATTCATAAATCGCATGAATATAACCCGTCATATTGAGTTACATATAAGAAAGAAATATAAGTGCGACCATTGTGGTGAATATTTTGAGTATAAAGATAGTTTAACAACGCATATGTTGCGCCATTCGGACGTGCGTTGTAAAGTTTGTCGTAAACGTTTCTTTTCCAGAGTTGATTTATATAAACACAAGAAGAGAGGGTGTACTTTACGTAAATTTGGTTGTGGTATGTGTAACAAATCCTATAAGTTAACAAGGGATTTGATAAAGCATGAAGCACGCTGCCAGACGGGTAAAAGCGAGGCTAGCCTTAAGGAGATCAAGTGTCCATTATGTGCTAAAGTTTTTCTATCTAAGCAACGTGCAATTACGCATTTGAAAGAACACAAGGATGAAATAAAAACTGTTGAATACCATAAGGTCAAGTAG
Protein Sequence
MEFHKCLECSKAFLDIDELATHTKLHQEMHLAYALSAYVKLKKDKIWGCDRCHRGFLSERLLLLHRLEHVRKSVNPIQDIYYNKDKEKPYKCPECDYAFVAQSTLDTHSVIHKPFPHICYCGIGYYKQEDLRRHQKLLQCQKPQIKDTKPPNGLIKSEAKIKTSSIIKKKKKKANVPKSKSRLNNCIPLPLPPLDLKIKKIGDRKYQCPECLKVFVEKANVEKHYRAVHRGERPYPCHLCEKKFTQPSALKQHLIIHSGVKEHECKYCGKTFSSFHSKSLHERTHTGYKPYKCSYCSQTFSDPSAYKRHERIHTGDFKYRCEQCPMAFTDSSGLYAHRKRHKPEEARKYACNECDKKFYNKSFLSKHISVVHNKEYNFPCEICERKFSNKTNLINHISIHHVPIRKTYPCNICGKVLMGKTYLNIHIDRVHKRKTRHTCEFCSKKFYSKCAFSNHLAIHSKIKKYECDYCSLKMRIRSDLHKHIMSKHIGIRCKICSRYFPSRSSLDKHKLKESEKCNFCEMEFFCENSLKSHSLVHFKEQKTYECDYCGEVFINRMNITRHIELHIRKKYKCDHCGEYFEYKDSLTTHMLRHSDVRCKVCRKRFFSRVDLYKHKKRGCTLRKFGCGMCNKSYKLTRDLIKHEARCQTGKSEASLKEIKCPLCAKVFLSKQRAITHLKEHKDEIKTVEYHKVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-