Htar035371.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Herminia tarsipennalis
Gene Symbol
-
Assembly
GCA_945859575.2
Location
OX243858.1:9811488-9822544[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 2.9e-05 0.0031 18.9 3.7 1 23 275 297 275 297 0.97
2 28 9.7e-06 0.001 20.4 4.1 1 23 303 325 303 325 0.98
3 28 9.9e-05 0.01 17.3 5.9 1 23 331 353 331 353 0.98
4 28 5.6e-06 0.00059 21.2 4.4 1 23 359 381 359 381 0.99
5 28 4.7e-05 0.0049 18.3 4.0 1 23 387 409 387 409 0.97
6 28 4.7e-05 0.0049 18.3 5.4 1 23 415 437 415 437 0.98
7 28 6.5e-06 0.00068 21.0 3.7 1 23 443 465 443 465 0.98
8 28 0.0001 0.011 17.2 5.6 1 23 471 493 471 493 0.98
9 28 3.6e-06 0.00037 21.8 5.9 1 23 499 521 499 521 0.98
10 28 4.6e-06 0.00048 21.4 7.2 1 23 527 549 527 549 0.99
11 28 4.4e-07 4.5e-05 24.7 2.2 1 23 555 577 555 577 0.99
12 28 0.00013 0.014 16.8 6.8 1 23 583 605 583 605 0.97
13 28 9.3e-06 0.00097 20.5 6.0 1 23 611 633 611 633 0.99
14 28 4.4e-07 4.5e-05 24.7 2.2 1 23 639 661 639 661 0.99
15 28 0.00013 0.014 16.8 6.8 1 23 667 689 667 689 0.97
16 28 1.6e-05 0.0017 19.7 6.8 1 23 695 717 695 717 0.99
17 28 2.2 2.3e+02 3.6 0.6 5 21 726 742 725 743 0.90
18 28 1.7e-05 0.0018 19.6 4.9 1 23 750 772 750 772 0.98
19 28 4.1e-06 0.00042 21.6 4.1 1 23 778 800 778 800 0.98
20 28 1.4e-05 0.0015 19.9 6.2 1 23 806 828 806 828 0.98
21 28 1.5e-05 0.0016 19.8 7.4 1 23 834 856 834 856 0.98
22 28 0.0016 0.16 13.5 6.2 1 23 862 884 862 884 0.98
23 28 2.5e-06 0.00027 22.3 8.0 1 23 890 912 890 912 0.99
24 28 3.3e-06 0.00034 21.9 5.9 1 23 918 940 918 940 0.99
25 28 0.0009 0.094 14.2 4.5 1 23 946 968 946 968 0.98
26 28 1.8e-06 0.00018 22.8 6.8 1 23 974 996 974 996 0.99
27 28 5.8e-05 0.006 18.0 7.8 1 23 1002 1024 1002 1024 0.99
28 28 5.3e-07 5.6e-05 24.4 3.6 1 23 1030 1052 1030 1052 0.99

Sequence Information

Coding Sequence
ATGGAGAGTCTATCGATGTGTCGTATCTGTTTAGTGACCGATGTTCGGTTGTGTTCTATAGCGAGCCATTTACGAACGATGTACGAGACGATAACGGCTATGAAGTTCGAGAGAGAAGATGGGAGGCCGTTAGTAGCGTGTTATATCTGCCGTGCGAGGCTTCAGAACTGCTACCGGCTCCGGACCAGCTGTCTCCGGAGTGAGGAGCTGTTCACAGATATGCTGAGCAGTGGTGTGTTCAAACAACAAGATGCGTTACGTGCTAACTCGTTCAGAGTCGTGTCAGCTCTGCACTTTTGCATGGGGCACGCGCTGCGGAACAACGTAGAGTGTCACATCAACAAAGAGGCCATGAAGATTAAAGATGCTAAAGACATAAAATTAGAAATAGAAGACACAATTCTTGAAGAAAATGAACCAAATGACGCCGGCCCATCTTCACAGTCAGCCGATAGTGTATGTGGAGACATAAGTGATCCTGAGACAGATGCTGAAGAAATAAAATTAGACACAATTATTGAAGTATATGAGCCGATTGGTGCCGTCCCTTCATCACAGTCAGCAGACGTACGTGTAGATGTAAATGATACCAGGACAGATATTCCTGTACTCAGGGAACCTGAAAATAAAAATATTGTCTTTGAGAAACCGATTGAAACAAATATTAAAACAACAAAAAACAAACATGAAGATAATACAGGGATGGCGCATAATGAAGTTGACAAACAAACATCGAAACATGACATTTGTTCAAATAATAAAAGGTTTAGATCAAAGGCTCATTTAGAAAGTCGCACTtgcacacgatctaataaaaaactatttatttgtgatgtttgcggcaaatgcttcaagctaaaaacacatttatcagaacacatggtcacacacagtgatgagaaacggtttcagtgcgatgtgtgcaacaaatacttcaggactaaacaacatttaacaacacacatggtcatgcacattggtgagaaacggtttaagtgtgatgtgtgtaacaaatgcttcaagctaaaaacacatttatcagaacacatggtcacacacagtgatgagaaacggtttcagtgtgatgtgtgcaacaaatgcttcagtctaaaatcacaattatcgcaacacatgtacactcacactgatgataaacggtttaattgcgatgtgtgcaaaaaatacttcagtactaaacaacatttaacaacacacatggtcatgcacattggtgagaaacggtttaagtgtgatgtgtgcgacaaatgcttcaagctaaaaacccatttatcagaacacatggtcacacacagtgatgagaaacggtttcagtgtgatgtgtgcaacaaatacttcagtactaaacaacatttaacaacacacatggtcatgcacattggtgagaaacggtttaagtgtgatgtgtgcgacaaatgcttcaagctaaaaacacatttatcagaacacatggtcagacacagtgatgagaaacggtttcagtgtgatgtgtgcaacaaatgcttcagtactaaacaacatttaacaacacacatggtcatgcacattggtgagaaacggtttaagtgtgatgtgtgcgacaaatgcttcaagctaaaaacccatttaacaagacacatgaactcccacactgatgcgaaacggtttcagtgtgatgtgtgcaacaaatccttcagcctaaaatcacaattaacgcaacacatgtacactcacactgatgataaacggtttaattgccatgtgtgcaaaaaatactttagtactaaacaacatttaacaacacacatggtcatgcacattggtgagaaacggtttaagtgtgatgtgtgcgacaaatgcttcaagctaaaaacccatttaacaatacacatgaactcccacactgatgcgaaacggtttcagtgtgatgtgtgcaacaaatccttcagcctaaaatcacaattaacgcaacacatgtacactcacactgatgataaacggtttaattgccatgtgtgcaaaaaatactttagtactaaacaacatttaacaacacacatggtcatgcacattggtgagaaacggtttaagtgtgatgtgtgcgacaaatgcttcaagctaaaaatacatttaactagacacatgtacacacacactgataagaaaccatttcgttatgtgtgcagcaaatatgtcgggagcaaaaaacatctaacacaacacatgcactcgcaaacagctaagaaacagtttcaatgtgaaatatgtaataaatactttaggcataaaacaaatttaacacaacatgtgtacacacacatcgatgaaaaacgattccaatgtgacgtgtgcaataaaaacttcaagagtaaacaacatttgataaaacatatttacacacacactgatgagaaaccgtttcagtgtggtgtgtgcaacaaatgcttcaggactaaacaacatttatcaacacacatggtcacgcacattggggagaaacggtttaagtgtgatgtgtgcgacaaatgctttaagctaaatactcatttaacaagacacatgttcacacacactgatgagaaaccgtttcaatgtgatgtgtgcaaaaaatacgtcagaagtaagcaacatttaacacaacacatgcattcacacacagttaagaaacagtttcaatgtaaggtgtgcaaaaaatgctttaagcaaaaagcaaatttaacacaacatatgcacacacacaccgatgaaaaacgattccaatgtgatgtgtgcaacaaatactttaggcaaaaaacacatttaacaagacacatgtacacacacactgacaagaaacagtttcagtgtaatgtgtgcaagaaatgcttcaggttagatatatatttgacacaacacatgtacactcacactggtgagaaacgatttcaatgtgatgtgtgcaacaaatgcttcaggcaaagaactcatttaacagaacacatgcagacacacaccgacaagaaactttttcagtgtaatgtgtgcaagaaatgcttcaggttaaagatacatttaacacgacatatgtacacacacactggtgaaaaacgatttcaatgtaatgtatgcaacaaacgtttcaggcaaaaagcacatttaacaggacacatgaacacacacactgatgaaaaacgatttcaatgtgagGAACTGTGCCCGGTGCTGGGCCACACTGGTACATTCCATGATTATATGCTTGGGCGTTTCCTCATGTTCCATGCACCTTCTGCACAGTGGGCTATCTGTGATCCCGATAGTGTGAAGGTGCTTGTTGAGGGGACAATGGCCTGTCAGGATGCCTATTGCTTTTCGCAGTTTGTCCCTGTTTAG
Protein Sequence
MESLSMCRICLVTDVRLCSIASHLRTMYETITAMKFEREDGRPLVACYICRARLQNCYRLRTSCLRSEELFTDMLSSGVFKQQDALRANSFRVVSALHFCMGHALRNNVECHINKEAMKIKDAKDIKLEIEDTILEENEPNDAGPSSQSADSVCGDISDPETDAEEIKLDTIIEVYEPIGAVPSSQSADVRVDVNDTRTDIPVLREPENKNIVFEKPIETNIKTTKNKHEDNTGMAHNEVDKQTSKHDICSNNKRFRSKAHLESRTCTRSNKKLFICDVCGKCFKLKTHLSEHMVTHSDEKRFQCDVCNKYFRTKQHLTTHMVMHIGEKRFKCDVCNKCFKLKTHLSEHMVTHSDEKRFQCDVCNKCFSLKSQLSQHMYTHTDDKRFNCDVCKKYFSTKQHLTTHMVMHIGEKRFKCDVCDKCFKLKTHLSEHMVTHSDEKRFQCDVCNKYFSTKQHLTTHMVMHIGEKRFKCDVCDKCFKLKTHLSEHMVRHSDEKRFQCDVCNKCFSTKQHLTTHMVMHIGEKRFKCDVCDKCFKLKTHLTRHMNSHTDAKRFQCDVCNKSFSLKSQLTQHMYTHTDDKRFNCHVCKKYFSTKQHLTTHMVMHIGEKRFKCDVCDKCFKLKTHLTIHMNSHTDAKRFQCDVCNKSFSLKSQLTQHMYTHTDDKRFNCHVCKKYFSTKQHLTTHMVMHIGEKRFKCDVCDKCFKLKIHLTRHMYTHTDKKPFRYVCSKYVGSKKHLTQHMHSQTAKKQFQCEICNKYFRHKTNLTQHVYTHIDEKRFQCDVCNKNFKSKQHLIKHIYTHTDEKPFQCGVCNKCFRTKQHLSTHMVTHIGEKRFKCDVCDKCFKLNTHLTRHMFTHTDEKPFQCDVCKKYVRSKQHLTQHMHSHTVKKQFQCKVCKKCFKQKANLTQHMHTHTDEKRFQCDVCNKYFRQKTHLTRHMYTHTDKKQFQCNVCKKCFRLDIYLTQHMYTHTGEKRFQCDVCNKCFRQRTHLTEHMQTHTDKKLFQCNVCKKCFRLKIHLTRHMYTHTGEKRFQCNVCNKRFRQKAHLTGHMNTHTDEKRFQCEELCPVLGHTGTFHDYMLGRFLMFHAPSAQWAICDPDSVKVLVEGTMACQDAYCFSQFVPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-