Htar033057.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- gl
- Assembly
- GCA_945859575.2
- Location
- OX243855.1:15935073-15944652[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 5.1e-05 0.014 16.5 0.1 18 41 243 263 235 265 0.88 2 5 0.59 1.6e+02 3.5 0.1 18 41 271 291 267 293 0.85 3 5 0.076 21 6.3 0.8 16 38 297 320 287 320 0.77 4 5 0.005 1.4 10.1 0.6 18 40 327 346 323 349 0.89 5 5 2.2 6e+02 1.6 1.3 18 40 355 374 347 376 0.82
Sequence Information
- Coding Sequence
- ATGGAGCAGATCGATATATCTGCGAGGAACGGTGCGGGGGAATGCCGAGAGAGGGGCGGGGGGGAGGCTGCCGACGTCTTGCTCTCATTGAAGCACGCCGTCGTCCATGGAGACTGTGCTGCCGAGACCGTACACCCTCAGATGATGGTGAACGGCGGAGGGGGGTACCCGTACTACGAGCACTATGGGGGGGCGCCGCTATTCCCCACCATGAGCGTCAACGTCTCCATGAACATGACCATGCATGGGTGTCCACCGGAGCAGCTTTGTTCACAGGTACAATGGAATCAGAACGCTGCAAACCCATCGGTAAACGTCGTGTACCCACAAACCCAGAACGTCATCTCCTCCTCCCCATACCCTTCCGCGACTTACTCGTTCACAGCAGACTTCAGGACCCCAAATCAAAGCGATCCCCTCATCACAGCCACTTCGACCTTCAAGCCTTTACTCCAGAACCCTCAAAAACCCAACCCCAACTACTCTATCTTCCAGCAAAAACCCAGTTTTCCGCAGAAGACTTTAGGACCGACTTTGAAGAGGTCTCCTTCGAGGTTGTATATGGAAACACAAAAAGATCAGAGTATGGCGAATGGGTATATCTTGAACCATCAAGGGCAGATGCATCCTCAAGAGTATGGTTATGCCGCGTGTGTGAATGCGTCTGGTAAAGTTCAGGTAGGAGCTCTAAGTGGTTGTTCAGAGGACGACGAACAGAAGCCCAACTTGTGCCGTATCTGCGGCAAGACGTACGCGCGGCCGAGCACTCTGAAGACGCACCTCCGGACCCACTCAGGAGAGCGGCCGTACAGATGTGGGGATTGCAATAAGAGCTTCTCACAAGCTGCTAACTTAACTGCACATGTTAGAACGCATACTGGACAGAAGCCATTTAGGTGTCCAATATGTGATCGACGCTTCAGTCAGAGTTCCAGCGTCACGACACATATGAGAACACATTCTGGAGAACGACCATACCAATGCAGATCCTGCAAGAAAGCTTTTTCAGACAGTTCTACATTAACGAAACATTTACGCATACATTCCGGGGAAAAACCTTACCAGTGTAAATTATGCTTATTGAGGTTCTCTCAATCAGGTAATCTAAACCGTCACATGCGGGTGCACGGCAACATGTCGGGCGGCATGCTCGGCTGA
- Protein Sequence
- MEQIDISARNGAGECRERGGGEAADVLLSLKHAVVHGDCAAETVHPQMMVNGGGGYPYYEHYGGAPLFPTMSVNVSMNMTMHGCPPEQLCSQVQWNQNAANPSVNVVYPQTQNVISSSPYPSATYSFTADFRTPNQSDPLITATSTFKPLLQNPQKPNPNYSIFQQKPSFPQKTLGPTLKRSPSRLYMETQKDQSMANGYILNHQGQMHPQEYGYAACVNASGKVQVGALSGCSEDDEQKPNLCRICGKTYARPSTLKTHLRTHSGERPYRCGDCNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYQCRSCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGNMSGGMLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265016;
- 90% Identity
- iTF_00288255;
- 80% Identity
- iTF_00795068;