Htar011466.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- -
- Assembly
- GCA_945859575.2
- Location
- OX243837.1:2222148-2222633[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-06 0.00017 22.3 0.0 5 43 1 38 1 39 0.93
Sequence Information
- Coding Sequence
- ATGTTAAAGGCTATAGAAGCAGTAAAAATTGGAGCCACTATTTTAGCTGCAGCCCGACAGCACGGTGTTCCACGGACAACGTTAACTGATAAAATACGTGGCCGCTATCCAGTAGAATGTTCCAAGGGACCGGCTACAGTCCTATCAAAAGATGAAGAAAATAATTTAAAAAGATGGATTATTTTTATAGCTGACAGTGGATTTCCAATAACAAAGGCCCAGTTGTTGGATAGTGTTAGTCTAATAATTAAAAAAATGCAGCGAAGTAACCCGTTTCAGAATGACAGACCAGGTCGTCACTGGATTGAAGCATTTATAAAGCGTCACCCAGAGGTAGGGCAAAGAGTAGCCCAAAATTTAACTCAAACACGTGCGTTGGTAAAAGAAAATAATTATAATCTTAGAATGTGGTTCAAAGAAGTCGAGGATTATTTTAAATCGAGTCAACCTCAAGAAGTCATTAAAGATCCACGTAGAATTTTGTAA
- Protein Sequence
- MLKAIEAVKIGATILAAARQHGVPRTTLTDKIRGRYPVECSKGPATVLSKDEENNLKRWIIFIADSGFPITKAQLLDSVSLIIKKMQRSNPFQNDRPGRHWIEAFIKRHPEVGQRVAQNLTQTRALVKENNYNLRMWFKEVEDYFKSSQPQEVIKDPRRIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00794499;
- 90% Identity
- iTF_00794502; iTF_00794499; iTF_00794501;
- 80% Identity
- -