Htar001347.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- -
- Assembly
- GCA_945859575.2
- Location
- OX243830.1:29062015-29071609[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00011 0.014 16.2 0.0 7 35 46 73 42 78 0.88 2 2 0.28 34 5.3 0.0 6 34 302 329 297 338 0.85
Sequence Information
- Coding Sequence
- ATGGACCATGGAATTCCTCTGAACATTCATGCAAGACCACGGCTAGTCGGGAGAAGACCTAATGCAATTGTCAACATAGAAACTGATGTATTTCAAGAGAAATCGTACAAGCAATATTCTTCACAACATTTAAGGGATGCTTTAATTGCTGTGAAGAAAGGATATTCTGTTTACGCAGCGTCAAATAAATATGGCGTACCAAGAAAGACTTTACGAAATTGGATGGAGAAGTATGATATTAAAAGTCAGTTTTCTAAAGGAAGGCGTGGAGCTAGGACGCAGATTTTGGATCCCTTAGACTTGATGGTTGAAACCAGGTCTGAGAAGTATGAAGATCCGTTGCGCAAGCTCTGTGCCAAGGCGGACTTTACAAACATACGAGTCACGGACACACATTTGGAAGAACAATTCGTGGATCGCATAAAGTGGTGTCCCGTGTGGGAGTCGACCCCACAACCTATTGCCCTTGCGGTTATAACCTTACAAGCTTTGCCTGCAGGAAAGCCCAAGCACTTCCCCATAGCAAACGTACAATGTCAGTACGACAGTCCTTCGGACACGGAGGGGGATTCCCGGCCCGCTATCGTGTCGTGCGTGGGAGCCGGCATGATGACCGGAACGGTCGTGTCGCGGCCGGCGGACGACCACAATTACGACACACGGGATGAACCACCGGCGTTTATCATACAACATGTTAATGCTGCGTTACAAGTACAGACATCACCATCGACAAGGTTCGAGCAGCGGATCGCGCCCAAGATCATGACTATAGGACCTGGCACCACCTCCTCTGTCAACGTAATACATGTTGGTGATAGACCGCAGGTGTTATGTCAAACTCAGCCACATACACAGACAGAGTTCAGTATTAACAAGCGGATCCGTCGCAGTGAGCAAGTGCTGCGACAGGCCGCGGACTGCGTCAGTCGAGGACTCACCTTTCAGACCGTTTCGGAACAATTCAACATACCTATCTCTACTATACGTTTCTTCATGGCGCGAAAAGGCATTTTACCACAACGACGGCGGGGAAGGAGCACACAGCCAACACGAGTCTGCAGTAGTCCGGAGCCCCCATTCCACATGCAACACTTCAAGTTGCCCGACATGTTGGCGCTCCGGACGGATGACGAAGACACCAACTCCAACACATAA
- Protein Sequence
- MDHGIPLNIHARPRLVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKGRRGARTQILDPLDLMVETRSEKYEDPLRKLCAKADFTNIRVTDTHLEEQFVDRIKWCPVWESTPQPIALAVITLQALPAGKPKHFPIANVQCQYDSPSDTEGDSRPAIVSCVGAGMMTGTVVSRPADDHNYDTRDEPPAFIIQHVNAALQVQTSPSTRFEQRIAPKIMTIGPGTTSSVNVIHVGDRPQVLCQTQPHTQTEFSINKRIRRSEQVLRQAADCVSRGLTFQTVSEQFNIPISTIRFFMARKGILPQRRRGRSTQPTRVCSSPEPPFHMQHFKLPDMLALRTDDEDTNSNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -