Htar009109.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- -
- Assembly
- GCA_945859575.2
- Location
- OX243835.1:8167668-8169005[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-06 0.00046 20.9 0.0 18 41 2 25 1 26 0.86 2 2 2.5 3.1e+02 2.2 0.0 22 33 146 157 145 161 0.95
Sequence Information
- Coding Sequence
- atgggatacttcaaggcagctaaacacttcaatgttccgaagtcaacacttcatcgatttgttaatgataaaaactcgcccattgaattggttacggataaagtattagggcgacggccagttttgaatacagatcttgaaaatctgctggttgagtacatatctactatggaaaataaattttatgggctgactacaacggatttgcgccggttggcataccagttagctataaaacataatttgaaaaacccttttaaagatgggtttgccgggaaacactggttgagaggattttcaaaacgaaatcagaatattttatccataagagagccgaataaaacccatcaagcaagatccagtggattcgctaaagagagaatggaccaattttacaacaatcttgaaaaaatccagagtgagaagtctttcccagctgcacgaatatttaacgtcgatgagagtacactcttcgtagttcagagtaaaataccaaaaattatagcgcgaaaaggaaaaatacaaattggagcaatgacgtcagacaaaagagagtccttaataaccgctgtaatctgtatgagccctgcaggaatatttgtccctcccatgatcatttttccgcgcaaaaatatgtctgatgctctaatgaaggGAGCCCCAGTTGGGGCTATAGGAAAAGCACACCCATCGGGATGGATACAAATTAACTTATTTACGCAATGGTTCCTACACTTTGTAGAATATGTTAATCCAAGTGAAGCATCACCAGTGCTACTGATTCTCGATGGTCATTCCAATCATGCTAAAAATATAGAGCTAATAGATCTTGCTAAGCAACATCATGTTACCATCCTGCCACTGCCACCTCATTGTACACACAAAGTTCAGCCGGTCTATCAAACTTTTATGGGCCCTTTAAAATCTCATTATGGTGAAGAAGTTCAACTTTTTCTCACAGATAATAATCGATCTTTAACACAATATCATGTTGTTGAGCTATTTGGAAAAGCCTATATCAAGTGCCAAACTTTAGAAATTGCTGCAAATGGTTTTAGAATTAGTGGTATATACCCTTTTAATCGAAATGCGTTTAGTGAAGCCGATTCTGTAGCCTCTGCCGCAGATTTTGAACAAGAGGATCACAATTTTCAGAAAATAAAAAGAACAACCAAGGAAAATCTCAAAAAGAAAAGAGTAAAGAAGACAAACAAGAAAAATACAACGGAAAGTGATTCGTCAGACTCGAACCCTGATGTGATCTCAGGCTATAATTTTGACTCGTCCTATGATATGAAAAATGAGGCTACAATCTCTACTGATGAAGAATCTGAATGA
- Protein Sequence
- MGYFKAAKHFNVPKSTLHRFVNDKNSPIELVTDKVLGRRPVLNTDLENLLVEYISTMENKFYGLTTTDLRRLAYQLAIKHNLKNPFKDGFAGKHWLRGFSKRNQNILSIREPNKTHQARSSGFAKERMDQFYNNLEKIQSEKSFPAARIFNVDESTLFVVQSKIPKIIARKGKIQIGAMTSDKRESLITAVICMSPAGIFVPPMIIFPRKNMSDALMKGAPVGAIGKAHPSGWIQINLFTQWFLHFVEYVNPSEASPVLLILDGHSNHAKNIELIDLAKQHHVTILPLPPHCTHKVQPVYQTFMGPLKSHYGEEVQLFLTDNNRSLTQYHVVELFGKAYIKCQTLEIAANGFRISGIYPFNRNAFSEADSVASAADFEQEDHNFQKIKRTTKENLKKKRVKKTNKKNTTESDSSDSNPDVISGYNFDSSYDMKNEATISTDEESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -