Htar003819.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- -
- Assembly
- GCA_945859575.2
- Location
- OX243832.1:8504263-8506182[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.6e-08 1.2e-05 26.0 0.0 1 37 8 44 8 47 0.91
Sequence Information
- Coding Sequence
- ATGCCTAAATTACCTCAATATACCAAAGAACAGTTAGAAAAGGCTCTAGAAGAAATAAATAATGGCTCTGCTGTGCGAGCAGCTGCTAAAAAATATGGTATACCTAAAGCAACACTACATTTTCGGATTCTAAACCCGAACTCCAAGAATGCTTTTGGACCATTACCTTTTCTAACTGCAGAAGAAGAAAAGGCCATAGAAGAATGGTTGTTTGATATGAGCAAAAGAGGATTTCCTAGAAAAGCAGATGATATTTTAGATTCTGTACAAAACTATCTCAATCAACATCCTAGAGAGACTCCATTCCAAGAAAACAGGCCTGGAAAAGGATGGTTGAAAGGATTCCTGAAACGACATCCTAGGATAACTCAAAGAGCAGCAGAGGGGGTTACTTATGCCAGTGCCTGTGTGTCAGAATCAGACATACGAAATTGGTTTAATCTGGTTATGACTGAGCTAATTAAATGTGATCTATTGGACATTCTCGAGGACCCATCCAGAATTTTTAACGCTGATGAAAGTGGTTTTGGATCCTGTCCAAATACCGGAAAAGTTTTTTCTGAAAGAGGGGCTAAGAATGTCTACATAGTCGAGAAAGCAAACGCCAAAGAAAGTATGACGGTGCTCTTTACAATATCAGCTGATGGACAAATGGTACTGCCTACGATCATGTACCCTTATCAACGTTTACCTGACAGGATTCGACAAACTGTTCCTAATGAGTGGGGTGTCGCTACGAGCAGCTCAGGATGGATGACGGCAGACACATTCAAATATATAATCCAGCATATTTTTCATCCATTTTTGGTAAAGAATAACGTCAAGTTTCCAGTTTTGTTATTTGTAGATGGTCATAGATCGCATTTAACCTACGAATTAAGCATGTTAGCTCGCTCCCTTCAAATAGAGATATTTGCTCTATACCCAAATTCTACAAGGATCCTGCAACCGGCAGATGTGTCTCTTTTTAGACCTGTAAAGCAGTTTTGGAAAGCAGCAGTTAAAGAATGGCAGCAAGATGAGGGTGAAATAGTGACAAAACAAAACTTTGCTTTGATTCTGAAAAAAGTTACAGACAAAATAAGTCCTGCCTGTATAATCAATGGCTTCCGAGCTTGCGGTCTATACCCATTTGATCCTAATGCTGTAGATTATTCTAAATGCATCGCTCCCCCAAAACCGGTTCCTTCTACAACAGAAAATACAGAGATTTCTAACAATGAATCTGATAGAACACTGCCATTTTCGAAATTTATGGAGATTGTTGGTCCAGAAATGATATCAAAGTTTAAAGATATCAAAAACATATTACAGGATGTGGAGAACAATGAATCATTTTTTATTCTCTACCAAATTTGGGAGTTTTATAATAGTAAACCTAACACCAACGAAGACGCAAATTTAAAAGCTATTGAAAGTAACGAAGGCGAAAACATTGATCCAACACCGACAACTTCTACAAACAATGTGCAAAGAGAAGAAATCGTCAATGTATTCACTGAAAACGATGAAAGAATAAACAGATTTATAGATGAAATTCTAGAATGTGACAAAGAGCAAGATAATATTCTCCAGCTAGAAACTATGGATGAACAACACAATAATAATTGTGACCATCAGACCTGTGAAACCGAAGAACGAACCAACACATTTAACAATGATATAGAATACAGCTCGCAGGACCCTTCGATCCAAGAAGCAAACGCAACTGCTGCAGCTACTCTACCTACTGAAGAACTTATCACTTTAGGAGACCTCGGAGTACCAAATACATGTGACAGCGAGATTAACTTGAATCAGCCATCATGTTCAACAGCTACTGACATAAAAGACTTTTTGAGATTACCTTCAACACCGTCTAGGAAAGGAAAACGTAACGTCGAAAGGCTGCCTTATCATATTTCAGGGCTAGAATATTAA
- Protein Sequence
- MPKLPQYTKEQLEKALEEINNGSAVRAAAKKYGIPKATLHFRILNPNSKNAFGPLPFLTAEEEKAIEEWLFDMSKRGFPRKADDILDSVQNYLNQHPRETPFQENRPGKGWLKGFLKRHPRITQRAAEGVTYASACVSESDIRNWFNLVMTELIKCDLLDILEDPSRIFNADESGFGSCPNTGKVFSERGAKNVYIVEKANAKESMTVLFTISADGQMVLPTIMYPYQRLPDRIRQTVPNEWGVATSSSGWMTADTFKYIIQHIFHPFLVKNNVKFPVLLFVDGHRSHLTYELSMLARSLQIEIFALYPNSTRILQPADVSLFRPVKQFWKAAVKEWQQDEGEIVTKQNFALILKKVTDKISPACIINGFRACGLYPFDPNAVDYSKCIAPPKPVPSTTENTEISNNESDRTLPFSKFMEIVGPEMISKFKDIKNILQDVENNESFFILYQIWEFYNSKPNTNEDANLKAIESNEGENIDPTPTTSTNNVQREEIVNVFTENDERINRFIDEILECDKEQDNILQLETMDEQHNNNCDHQTCETEERTNTFNNDIEYSSQDPSIQEANATAAATLPTEELITLGDLGVPNTCDSEINLNQPSCSTATDIKDFLRLPSTPSRKGKRNVERLPYHISGLEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00794482; iTF_00794483; iTF_00835526; iTF_00834577; iTF_00835525;
- 90% Identity
- iTF_00835526;
- 80% Identity
- -