Basic Information

Insect: Herminia tarsipennalis
Gene Symbol: Pdxk_1
Assembly: GCA_945859575.2
Location: OX243842.1:11856499-11872482[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 2.8e-07 3.5e-05 24.5 0.0 2 37 136 170 135 173 0.95

2 2 2.2 2.8e+02 2.4 0.0 18 36 184 203 180 205 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	2.8e-07	3.5e-05	24.5	0.0	2	37	136	170	135	173	0.95
2	2	2.2	2.8e+02	2.4	0.0	18	36	184	203	180	205	0.89

Sequence Information

Coding Sequence: ATGTCGTCAGATTCAACCCCTCGAGTGCTTTCCATCCAGAGCCATGTAGTTCATGGCTATGTTGGTAATAAAAGTGCTGTTTTTCCACTCCAGGTGCTTGGATTTGAAGTAGACTTTATAAACACAGTACAGTTTTCAACTCACACTGGATACAAACATATAAAAGGGAATGTTTTACAAAATGAAGATATGGATGCCCTAATTGAAGGCCTATCTGTAAATGAAGTTGACTATTATACACACTTTCTGACTGGATACTCAAGATCACCGGATTCTTTGAAAAAGATTGCAGAAATCATCAAGAAATTGCGACAGAAGAATCCTAAACTAGTATATGTACCTATATACCCGATGCCTTTTCAATATAAGACTCCAGAAAATGCAAGCAAACGAAAAAAATACACAAAAACAGAGTTGGAAAATGCCATAGACGAAATTAAGGAAGGCGTTTCTATAAGAAAAATTTCAATAAAGTATGGTATAGATAGAAGTACATTAAGACGATACAAATTAGATGAAAATAGAATTCATAAATTTGAAGATAAAAACAGTCAGTACAAGGCATCACAGGTATTTACAATAGCGGAGGAAACACTGCTTGCTAATTATTTATTGTCGTGCAGTAAAATGCATTATGGTTTGACACGAAAACAAGCAATGCAGTTGGCATTTGAATTTGCTACAATTAATTCAAAGAAGTTTCCTGATAGCTGGACGACGAATCATTCTGCGGGGAAAGACTGGTTTCGGGGTTTCCTTTGTAGAAATCCCGAATTAAGTCTAAGAACACCCGAAGCCACTAGTCTATCTCGTGCTACCAGTTTCAACAAAAAGAACGTCAAAGAGTTTTTCACAAATTTAAAAACAGTTCTCGAGAAATACAAGTTTGAGGCTCACAATATTTATAATTGTGACGAAACTGGGTGCACGACCGTACAAAACTGTCCAAAAGTGATAGCCAATAAAAAAGCTAAACAGGTCGGCCAAGTCACATCTGCGGAAAGAGGAACAACTGTAACCCTTTGTTTTGCCATTAATGCAATTGGAAATGTGATGCCTCCTTTCTTTATATTTCCAAGGGTTAGATATCAAGACCATTTCGTATCTGAAGGACCAGAAGGGTCAAACGGAGATGCATATCCGAGCGGTTGGATGACGACGAAAAGTTTCGTGAAATACCTCGAACATTTTACGAAATACTCTCGTGCCTCCAAAACTAATCGCGTACTCTTAATACTAGATAATCATGAGAGTCATGTAAGTATTGAGGCAATTACTTTTGCCAAGAATAATGGGATTACACTGTTAACACTTCCTCCACACTGCAGCAACAAATTACAGCCCCTTGATGTTTCCGTTTATTCCTCATTTAAATCTCGATACAACACAGCTATGAACAATTGGATGTTATCCCACCCAGGCAAGACTATCACTATCTACAATATCCCAGGATTTATTAGGACGATTATGTCTCAAGCATTCACCCAAAGTAACATATTAAGCGGATTCCAAAAAACTGGCATTCATCCGTTTAACCCCGAAATTTTTAGTGAGGAAGACTTTTTGTGTTCTGCTGTCACAGACAGAGATTTTCCTCAAGAAAAAGCATCAACAAATGAAGAAATTTTTTTAGAAAGTCAAATTGAAGTTGCCACTGAACTTGAGGTATCGTCTCAGCCTGCACAGAACGCTACATTTCCGATTAATTTTCCACAAGAATTTGAAAATAATATGGGTAATATTAACCACGATTCTATTAATGAGTTACCATCTCCTAATATTTTCGGAATCGAAAACGAATCTCTCCAAAATGTTCAAGATAATGCTTACGGAACCCCAAATACTTCAAAGTCAAACGTAACCGTAACACGTGCCAAATTAAGTCGTGCTAGGTCGGAGTCAAATCTATACTCAAAAAAAGAGGAAATATTCATAATTTTTCCAGAACCTCGTACGAGTAAACGGGCATTGTCTTTGCCATCACAAAATGAAATATCTTCCAATTCACTTAAAGCTGACCTATTGACTCAAAACAAACATGGCAATATCATTTTACAGTCACCTTCTACTGCATGTATGGAATCAAAACAGCATAATACCCTGGACCTATTCACAGCGTCACCGATGCAGTCCACTTCAAAAGATTTTAAAGTATTGATCACTCCAGAAAACGTGAGACCATATCCGAAGGCAGCTCCCAGAAAGATTACTCGGCGAGGACGTCAACCTGGCAAGACCAAAATATTGACAATGACACCTGATAAAGAAAATATCAATAGTGAGAATCTTACTGAAACTCAAATTCAAGAGAAACCCGACCCTCAAAATAACAAATGTGGTAATGATACGAAATCAAAAAATAAGGCTAAGACAATTCAAGCTATTGATGTGATAAGAAGACAAAGAATAGGCAGTATTACAAAAAGAGTTTTTGAGCAAAGTGATACAGAAAATGATGCAAACTATTGTATTAAACAAACTAGGAAGACTCAAGGCAACACTAAAGGCAAAAAGAATGTGAAAGCCAAACAAGATGTGAAACAAAAAGATAAGAAAACCAAACCAAAGAGAACCAAAAAAGAAGTATGCGATCCGGTAATGGGAGACAACGGCAAAATGTACGTCCCAGAAGACATCCTGCCAGTATACCGCGACATAGTTGTGCCATTAGCGGACATACTCACACCGAATCAGTTCGAAGCTGAGTTGATCACGGGGATTCAAGTGAAGGACATCGATGGCGCCCTGAAGGCAATCTTGGCGCTCCACGATAAAGGCGTGAAAACTGTTGTGTTGTCGAGCACAGACTTGGGAGATGACAATAGTATGATCGCGCTTGCTAGTGGTTCAGGAACGTGTTACAAGATTCAAATACCGAAGCTGGATGCGACGTTCACGGGCACTGGTGACTTGTTTGCGGCGCTCTTCTTGGCGTGGTCTCACAAAACTAACAATGACTTAAAGTTGACTTTGGAAAAGACTATATCCACGCTACAACATATCGTCCATGACACATACCAAAAAGCTAGAGATGTTCAACCTACAGGCAAGATTCCTTGCGCCCTAATAGAATTAAGACTTGTGCAGAATAAGGTTATTATTGAGAATCCTAAGATAAACATTACAGCGATAGAAATAAGCAAAAGTTAA
Protein Sequence: MSSDSTPRVLSIQSHVVHGYVGNKSAVFPLQVLGFEVDFINTVQFSTHTGYKHIKGNVLQNEDMDALIEGLSVNEVDYYTHFLTGYSRSPDSLKKIAEIIKKLRQKNPKLVYVPIYPMPFQYKTPENASKRKKYTKTELENAIDEIKEGVSIRKISIKYGIDRSTLRRYKLDENRIHKFEDKNSQYKASQVFTIAEETLLANYLLSCSKMHYGLTRKQAMQLAFEFATINSKKFPDSWTTNHSAGKDWFRGFLCRNPELSLRTPEATSLSRATSFNKKNVKEFFTNLKTVLEKYKFEAHNIYNCDETGCTTVQNCPKVIANKKAKQVGQVTSAERGTTVTLCFAINAIGNVMPPFFIFPRVRYQDHFVSEGPEGSNGDAYPSGWMTTKSFVKYLEHFTKYSRASKTNRVLLILDNHESHVSIEAITFAKNNGITLLTLPPHCSNKLQPLDVSVYSSFKSRYNTAMNNWMLSHPGKTITIYNIPGFIRTIMSQAFTQSNILSGFQKTGIHPFNPEIFSEEDFLCSAVTDRDFPQEKASTNEEIFLESQIEVATELEVSSQPAQNATFPINFPQEFENNMGNINHDSINELPSPNIFGIENESLQNVQDNAYGTPNTSKSNVTVTRAKLSRARSESNLYSKKEEIFIIFPEPRTSKRALSLPSQNEISSNSLKADLLTQNKHGNIILQSPSTACMESKQHNTLDLFTASPMQSTSKDFKVLITPENVRPYPKAAPRKITRRGRQPGKTKILTMTPDKENINSENLTETQIQEKPDPQNNKCGNDTKSKNKAKTIQAIDVIRRQRIGSITKRVFEQSDTENDANYCIKQTRKTQGNTKGKKNVKAKQDVKQKDKKTKPKRTKKEVCDPVMGDNGKMYVPEDILPVYRDIVVPLADILTPNQFEAELITGIQVKDIDGALKAILALHDKGVKTVVLSSTDLGDDNSMIALASGSGTCYKIQIPKLDATFTGTGDLFAALFLAWSHKTNNDLKLTLEKTISTLQHIVHDTYQKARDVQPTGKIPCALIELRLVQNKVIIENPKINITAIEISKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -